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LOC110486296 beta-1,3-N-acetylglucosaminyltransferase lunatic fringe [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110486296, updated on 14-Dec-2023

Summary

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Gene symbol
LOC110486296
Gene description
beta-1,3-N-acetylglucosaminyltransferase lunatic fringe
See related
Ensembl:ENSOMYG00000014845
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC110486296 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
7
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 13 NC_048577.1 (38474403..38482105)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 13 NC_035089.1 (35516331..35524259)

Chromosome 13 - NC_048577.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORD35 Neighboring gene small nucleolar RNA SNORD35 Neighboring gene 40S ribosomal protein S11 Neighboring gene protein tweety homolog 3 Neighboring gene sorting nexin-8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in pattern specification process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of Notch signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,3-N-acetylglucosaminyltransferase lunatic fringe

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048577.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    38474403..38482105
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021557778.2 → XP_021413453.2  beta-1,3-N-acetylglucosaminyltransferase lunatic fringe

    UniProtKB/TrEMBL
    A0A8C7VK73, A0A8C7VK75
    Related
    ENSOMYP00000031694.2, ENSOMYT00000034557.2
    Conserved Domains (1) summary
    pfam02434
    Location:110 → 359
    Fringe; Fringe-like
Nucleotide Protein
Heading Accession and Version

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