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LOC110485562 dnaJ homolog subfamily A member 3, mitochondrial [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110485562, updated on 14-Dec-2023

Summary

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Gene symbol
LOC110485562
Gene description
dnaJ homolog subfamily A member 3, mitochondrial
See related
Ensembl:ENSOMYG00000003732
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC110485562 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
13
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 13 NC_048577.1 (11216669..11273353)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 13 NC_035089.1 (6688630..6711177, complement)

Chromosome 13 - NC_048577.1Genomic Context describing neighboring genes Neighboring gene platelet-derived growth factor subunit A-like Neighboring gene uncharacterized LOC110485564 Neighboring gene uncharacterized LOC118938432 Neighboring gene vasorin Neighboring gene beta-1,3-galactosyltransferase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables heat shock protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein kinase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables unfolded protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitochondrion organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein folding IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to heat IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
dnaJ homolog subfamily A member 3, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048577.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    11216669..11273353
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036942336.1 → XP_036798231.1  dnaJ homolog subfamily A member 3, mitochondrial isoform X1

    UniProtKB/TrEMBL
    A0A8C7V3F2
    Related
    ENSOMYP00000007279.2, ENSOMYT00000008106.2
    Conserved Domains (1) summary
    COG0484
    Location:91 → 440
    DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

  2. XM_036942337.1 → XP_036798232.1  dnaJ homolog subfamily A member 3, mitochondrial isoform X1

    UniProtKB/TrEMBL
    A0A8C7V3F2
    Related
    ENSOMYP00000139288.1, ENSOMYT00000138473.1
    Conserved Domains (1) summary
    COG0484
    Location:91 → 440
    DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

  3. XM_036942338.1 → XP_036798233.1  dnaJ homolog subfamily A member 3, mitochondrial isoform X2

    UniProtKB/TrEMBL
    A0A8K9V049, A0A8K9Y3C8
    Related
    ENSOMYP00000117069.1, ENSOMYT00000119355.1
    Conserved Domains (1) summary
    COG0484
    Location:91 → 440
    DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Nucleotide Protein
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