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LOC110485558 vasorin [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110485558, updated on 14-Dec-2023

Summary

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Gene symbol
LOC110485558
Gene description
vasorin
See related
Ensembl:ENSOMYG00000003604
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC110485558 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
6
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 13 NC_048577.1 (11323643..11359141, complement)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 13 NC_035089.1 (6492859..6532419)

Chromosome 13 - NC_048577.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110485564 Neighboring gene dnaJ homolog subfamily A member 3, mitochondrial Neighboring gene uncharacterized LOC118938432 Neighboring gene beta-1,3-galactosyltransferase 2 Neighboring gene beta-1,3-galactosyltransferase 2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of the rainbow trout transcriptome using Sanger and 454-pyrosequencing approaches. Salem M, et al. BMC Genomics, 2010 Oct 13. PMID 20942956, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vasorin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048577.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    11323643..11359141 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036942318.1 → XP_036798213.1  vasorin

    UniProtKB/TrEMBL
    A0A060YFP5, A0A8C7M0W1
    Conserved Domains (5) summary
    TIGR00864
    Location:267 → 346
    PCC; polycystin cation channel protein
    sd00033
    Location:52 → 75
    LRR_RI; leucine-rich repeat [structural motif]
    pfam00041
    Location:482 → 554
    fn3; Fibronectin type III domain
    pfam13855
    Location:75 → 134
    LRR_8; Leucine rich repeat
    cd21340
    Location:54 → 249
    PPP1R42; protein phosphatase 1 regulatory subunit 42

  2. XM_036942319.1 → XP_036798214.1  vasorin

    UniProtKB/TrEMBL
    A0A060YFP5, A0A8C7M0W1
    Related
    ENSOMYP00000007021.2, ENSOMYT00000007819.2
    Conserved Domains (5) summary
    TIGR00864
    Location:267 → 346
    PCC; polycystin cation channel protein
    sd00033
    Location:52 → 75
    LRR_RI; leucine-rich repeat [structural motif]
    pfam00041
    Location:482 → 554
    fn3; Fibronectin type III domain
    pfam13855
    Location:75 → 134
    LRR_8; Leucine rich repeat
    cd21340
    Location:54 → 249
    PPP1R42; protein phosphatase 1 regulatory subunit 42
Nucleotide Protein
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