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LOC110485332 xylosyltransferase 1 [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110485332, updated on 14-Dec-2023

Summary

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Gene symbol
LOC110485332
Gene description
xylosyltransferase 1
See related
Ensembl:ENSOMYG00000067519
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC110485332 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
12
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 12 NC_048576.1 (96768391..96838680)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 13 NC_035089.1 (65864520..65875055)

Chromosome 12 - NC_048576.1Genomic Context describing neighboring genes Neighboring gene transmembrane channel-like protein 5 Neighboring gene transmembrane channel-like protein 5 Neighboring gene piggyBac transposable element-derived protein 4-like Neighboring gene oocyte zinc finger protein XlCOF6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heparan sulfate proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
xylosyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048576.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    96768391..96838680
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036939384.1 → XP_036795279.1  xylosyltransferase 1

    UniProtKB/TrEMBL
    A0A8K9UVI0, A0A8K9V3A0
    Related
    ENSOMYP00000118343.1, ENSOMYT00000116991.1
    Conserved Domains (2) summary
    pfam12529
    Location:601 → 782
    Xylo_C; Xylosyltransferase C terminal
    cl27418
    Location:316 → 568
    Branch; Core-2/I-Branching enzyme
Nucleotide Protein
Heading Accession and Version

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