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SGCA sarcoglycan alpha [ Lonchura striata (white-rumped munia) ]

Gene ID: 110474801, updated on 2-Oct-2024

Summary

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Gene symbol
SGCA
Gene description
sarcoglycan alpha
Locus tag
RLOC_00004622
Gene type
protein coding
RefSeq status
MODEL
Organism
Lonchura striata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Lonchura
Orthologs
human mouse all
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Genomic context

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See SGCA in Genome Data Viewer
Location:
chromosome: 27
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_09 current lonStrDom2 (GCF_005870125.1) 27 NC_042592.1 (1271803..1277071)

Chromosome 27 - NC_042592.1Genomic Context describing neighboring genes Neighboring gene pyruvate dehydrogenase kinase 2 Neighboring gene protein phosphatase 1 regulatory subunit 9B Neighboring gene collagen type I alpha 1 chain Neighboring gene uncharacterized LOC116184524

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042592.1 Chromosome 27 Reference lonStrDom2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-sarcoglycan
Names
Alpha-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_005870125.1-RS_2024_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference lonStrDom2 Primary Assembly

Genomic

  1. NC_042592.1 Reference lonStrDom2 Primary Assembly

    Range
    1271803..1277071
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031507007.1 → XP_031362867.1  alpha-sarcoglycan

    Conserved Domains (1) summary
    pfam05510
    Location:17 → 175
    Sarcoglycan_2; Sarcoglycan alpha/epsilon
Nucleotide Protein
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Gene LinkOut

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