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SDCBP2 syndecan binding protein 2 [ Lonchura striata (white-rumped munia) ]

Gene ID: 110469010, updated on 2-Oct-2024

Summary

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Gene symbol
SDCBP2
Gene description
syndecan binding protein 2
Locus tag
RLOC_00000084
Gene type
protein coding
RefSeq status
MODEL
Organism
Lonchura striata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Lonchura
Also known as
Syntenin-2
Orthologs
human mouse all
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Genomic context

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See SDCBP2 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_09 current lonStrDom2 (GCF_005870125.1) 20 NC_042585.1 (2230712..2234367, complement)

Chromosome 20 - NC_042585.1Genomic Context describing neighboring genes Neighboring gene RAD21 cohesin complex component like 1 Neighboring gene uncharacterized LOC110468983 Neighboring gene syntaphilin Neighboring gene FKBP prolyl isomerase 1A Neighboring gene NSFL1 cofactor

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042585.1 Chromosome 20 Reference lonStrDom2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syntenin-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_005870125.1-RS_2024_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference lonStrDom2 Primary Assembly

Genomic

  1. NC_042585.1 Reference lonStrDom2 Primary Assembly

    Range
    2230712..2234367 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021527400.2 → XP_021383075.2  syntenin-2

    UniProtKB/TrEMBL
    A0A218US46
    Conserved Domains (1) summary
    cd00992
    Location:138 → 217
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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