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MTR 5-methyltetrahydrofolate-homocysteine methyltransferase [ Lonchura striata (white-rumped munia) ]

Gene ID: 110468858, updated on 2-Oct-2024

Summary

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Gene symbol
MTR
Gene description
5-methyltetrahydrofolate-homocysteine methyltransferase
Locus tag
RLOC_00001246
See related
Ensembl:ENSLSDG00000015149
Gene type
protein coding
RefSeq status
MODEL
Organism
Lonchura striata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Lonchura
Also known as
MTR_1
Orthologs
human mouse all
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Genomic context

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See MTR in Genome Data Viewer
Location:
chromosome: 3
Exon count:
34
Annotation release Status Assembly Chr Location
RS_2024_09 current lonStrDom2 (GCF_005870125.1) 3 NC_042568.1 (44630974..44681930)

Chromosome 3 - NC_042568.1Genomic Context describing neighboring genes Neighboring gene HEAT repeat containing 1 Neighboring gene actinin alpha 2 Neighboring gene ryanodine receptor 2 Neighboring gene uncharacterized LOC110468855

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042568.1 Chromosome 3 Reference lonStrDom2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cobalamin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables methionine synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in homocysteine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in methionine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tetrahydrofolate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
methionine synthase
Names
Methionine synthase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_005870125.1-RS_2024_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference lonStrDom2 Primary Assembly

Genomic

  1. NC_042568.1 Reference lonStrDom2 Primary Assembly

    Range
    44630974..44681930
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021527074.2 → XP_021382749.1  methionine synthase isoform X2

    UniProtKB/TrEMBL
    A0A218VBL3
    Conserved Domains (1) summary
    PRK09490
    Location:7 → 1255
    metH; B12-dependent methionine synthase; Provisional

  2. XM_021527073.2 → XP_021382748.1  methionine synthase isoform X1

    UniProtKB/TrEMBL
    A0A218VBL3
    Related
    ENSLSDP00000021424.1
    Conserved Domains (1) summary
    PRK09490
    Location:9 → 1256
    metH; B12-dependent methionine synthase; Provisional

  3. XM_021527077.2 → XP_021382752.1  methionine synthase isoform X3

    UniProtKB/TrEMBL
    A0A218VBL3
    Conserved Domains (1) summary
    PRK09490
    Location:1 → 1230
    metH; B12-dependent methionine synthase; Provisional

  4. XM_021527078.2 → XP_021382753.1  methionine synthase isoform X4

    Conserved Domains (1) summary
    cl22882
    Location:1 → 994
    S-methyl_trans; Homocysteine S-methyltransferase

  5. XM_021527081.2 → XP_021382756.1  methionine synthase isoform X5

    Conserved Domains (1) summary
    cl22882
    Location:2 → 948
    S-methyl_trans; Homocysteine S-methyltransferase
Nucleotide Protein
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