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SDC1 syndecan 1 [ Lonchura striata (white-rumped munia) ]

Gene ID: 110467921, updated on 2-Oct-2024

Summary

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Gene symbol
SDC1
Gene description
syndecan 1
Locus tag
RLOC_00004851
See related
Ensembl:ENSLSDG00000014873
Gene type
protein coding
RefSeq status
MODEL
Organism
Lonchura striata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Lonchura
Also known as
Syndecan-1
Orthologs
human mouse all
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Genomic context

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See SDC1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_09 current lonStrDom2 (GCF_005870125.1) 3 NC_042568.1 (103241729..103267771, complement)

Chromosome 3 - NC_042568.1Genomic Context describing neighboring genes Neighboring gene protein LYRIC Neighboring gene uncharacterized LOC116183498 Neighboring gene pumilio RNA binding family member 2 Neighboring gene b(0,+)-type amino acid transporter 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042568.1 Chromosome 3 Reference lonStrDom2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syndecan-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_005870125.1-RS_2024_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference lonStrDom2 Primary Assembly

Genomic

  1. NC_042568.1 Reference lonStrDom2 Primary Assembly

    Range
    103241729..103267771 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021525348.1 → XP_021381023.1  syndecan-1

    UniProtKB/TrEMBL
    A0A218VBJ2
    Related
    ENSLSDP00000021007.1, ENSLSDT00000023714.1
    Conserved Domains (1) summary
    pfam01034
    Location:245 → 305
    Syndecan; Syndecan domain
Nucleotide Protein
Heading Accession and Version

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