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LOC110442772 zeta-sarcoglycan-like [ Mizuhopecten yessoensis (Yesso scallop) ]

Gene ID: 110442772, updated on 21-Dec-2023

Summary

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Gene symbol
LOC110442772
Gene description
zeta-sarcoglycan-like
Locus tag
KP79_PYT12964
See related
EnsemblRapid:LOC110442772
Gene type
protein coding
RefSeq status
MODEL
Organism
Mizuhopecten yessoensis
Lineage
Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia; Autobranchia; Pteriomorphia; Pectinida; Pectinoidea; Pectinidae; Mizuhopecten
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Genomic context

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See LOC110442772 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
100 current ASM211388v2 (GCF_002113885.1) Unplaced Scaffold NW_018480046.1 (513441..528201, complement)

NW_018480046.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110442777 Neighboring gene brain tumor protein-like Neighboring gene tumor suppressor candidate 3-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018480046 Unplaced Scaffold Reference ASM211388v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zeta-sarcoglycan-like
Names
Zeta-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mizuhopecten yessoensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM211388v2 Primary Assembly

Genomic

  1. NW_018480046.1 Reference ASM211388v2 Primary Assembly

    Range
    513441..528201 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021486540.1 → XP_021342215.1  zeta-sarcoglycan-like

    Related
    XP_021342215.1, XM_021486540.1
    Conserved Domains (1) summary
    pfam04790
    Location:21 → 275
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  2. XM_021486537.1 → XP_021342212.1  zeta-sarcoglycan-like

    Related
    XP_021342212.1, XM_021486537.1
    Conserved Domains (1) summary
    pfam04790
    Location:21 → 275
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  3. XM_021486539.1 → XP_021342214.1  zeta-sarcoglycan-like

    Related
    XP_021342214.1, XM_021486539.1
    Conserved Domains (1) summary
    pfam04790
    Location:21 → 275
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein
Heading Accession and Version

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