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SGCD sarcoglycan delta [ Numida meleagris (helmeted guineafowl) ]

Gene ID: 110405167, updated on 15-Mar-2024

Summary

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Gene symbol
SGCD
Gene description
sarcoglycan delta
See related
Ensembl:ENSNMEG00000018049
Gene type
protein coding
RefSeq status
MODEL
Organism
Numida meleagris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Numididae; Numida
Orthologs
human mouse all
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Genomic context

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See SGCD in Genome Data Viewer
Location:
chromosome: 12
Exon count:
20
Annotation release Status Assembly Chr Location
100 current NumMel1.0 (GCF_002078875.1) 12 NC_034420.1 (10963743..11374130, complement)

Chromosome 12 - NC_034420.1Genomic Context describing neighboring genes Neighboring gene T-cell immunoglobulin and mucin domain-containing protein 4-like Neighboring gene hepatitis A virus cellular receptor 2 Neighboring gene uncharacterized LOC110405168 Neighboring gene mitochondrial ribosomal protein L22 Neighboring gene gem nuclear organelle associated protein 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_034420.1 Chromosome 12 Reference NumMel1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
delta-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Numida meleagris Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NumMel1.0 Primary Assembly

Genomic

  1. NC_034420.1 Reference NumMel1.0 Primary Assembly

    Range
    10963743..11374130 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021410212.1 → XP_021265887.1  delta-sarcoglycan isoform X1

    Conserved Domains (1) summary
    pfam04790
    Location:38 → 291
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  2. XM_021410219.1 → XP_021265894.1  delta-sarcoglycan isoform X3

    Conserved Domains (1) summary
    pfam04790
    Location:22 → 275
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  3. XM_021410211.1 → XP_021265886.1  delta-sarcoglycan isoform X1

    Conserved Domains (1) summary
    pfam04790
    Location:38 → 291
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  4. XM_021410218.1 → XP_021265893.1  delta-sarcoglycan isoform X2

    Related
    ENSNMEP00000021051.1, ENSNMET00000030677.1
    Conserved Domains (1) summary
    pfam04790
    Location:26 → 279
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  5. XM_021410210.1 → XP_021265885.1  delta-sarcoglycan isoform X1

    Conserved Domains (1) summary
    pfam04790
    Location:38 → 291
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  6. XM_021410215.1 → XP_021265890.1  delta-sarcoglycan isoform X1

    Related
    ENSNMEP00000021054.1, ENSNMET00000030680.1
    Conserved Domains (1) summary
    pfam04790
    Location:38 → 291
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  7. XM_021410213.1 → XP_021265888.1  delta-sarcoglycan isoform X1

    Conserved Domains (1) summary
    pfam04790
    Location:38 → 291
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  8. XM_021410217.1 → XP_021265892.1  delta-sarcoglycan isoform X1

    Conserved Domains (1) summary
    pfam04790
    Location:38 → 291
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  9. XM_021410214.1 → XP_021265889.1  delta-sarcoglycan isoform X1

    Conserved Domains (1) summary
    pfam04790
    Location:38 → 291
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  10. XM_021410221.1 → XP_021265896.1  delta-sarcoglycan isoform X3

    Conserved Domains (1) summary
    pfam04790
    Location:22 → 275
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  11. XM_021410220.1 → XP_021265895.1  delta-sarcoglycan isoform X3

    Related
    ENSNMEP00000021050.1, ENSNMET00000030676.1
    Conserved Domains (1) summary
    pfam04790
    Location:22 → 275
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  12. XM_021410222.1 → XP_021265897.1  delta-sarcoglycan isoform X4

    Conserved Domains (1) summary
    pfam04790
    Location:38 → 248
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein
Heading Accession and Version

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