U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Asph aspartate beta-hydroxylase [ Mus pahari (shrew mouse) ]

Gene ID: 110338639, updated on 15-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
Asph
Gene description
aspartate beta-hydroxylase
See related
Ensembl:MGP_PahariEiJ_G0023922
Gene type
protein coding
RefSeq status
MODEL
Organism
Mus pahari
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Coelomys
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Asph in Genome Data Viewer
Location:
chromosome: 22
Exon count:
30
Annotation release Status Assembly Chr Location
101 current PAHARI_EIJ_v1.1 (GCF_900095145.1) 22 NC_034611.1 (18716193..18926850, complement)

Chromosome 22 - NC_034611.1Genomic Context describing neighboring genes Neighboring gene clavesin 1 Neighboring gene small nucleolar RNA SNORA48 Neighboring gene uncharacterized LOC110338643 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene Neighboring gene U1 spliceosomal RNA Neighboring gene growth differentiation factor 6

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_034611.1 Chromosome 22 Reference PAHARI_EIJ_v1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-aspartic acid 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-aspartic acid hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
aspartyl/asparaginyl beta-hydroxylase

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Mus pahari Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PAHARI_EIJ_v1.1

Genomic

  1. NC_034611.1 Reference PAHARI_EIJ_v1.1

    Range
    18716193..18926850 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021221962.2 → XP_021077621.1  aspartyl/asparaginyl beta-hydroxylase isoform X10

    Related
    MGP_PahariEiJ_P0057056, MGP_PahariEiJ_T0057056.1
    Conserved Domains (5) summary
    TIGR02521
    Location:415 → 498
    type_IV_pilW; type IV pilus biogenesis/stability protein PilW
    TIGR02795
    Location:323 → 433
    tol_pal_ybgF; tol-pal system protein YbgF
    pfam05279
    Location:61 → 304
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    sd00006
    Location:439 → 463
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:572 → 726
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  2. XM_029533263.1 → XP_029389123.1  aspartyl/asparaginyl beta-hydroxylase isoform X2

    Conserved Domains (5) summary
    TIGR02521
    Location:481 → 564
    type_IV_pilW; type IV pilus biogenesis/stability protein PilW
    TIGR02795
    Location:389 → 499
    tol_pal_ybgF; tol-pal system protein YbgF
    pfam05279
    Location:61 → 370
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    sd00006
    Location:505 → 529
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:638 → 792
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  3. XM_029533265.1 → XP_029389125.1  aspartyl/asparaginyl beta-hydroxylase isoform X4

    Conserved Domains (5) summary
    TIGR02521
    Location:467 → 550
    type_IV_pilW; type IV pilus biogenesis/stability protein PilW
    TIGR02795
    Location:375 → 485
    tol_pal_ybgF; tol-pal system protein YbgF
    pfam05279
    Location:61 → 356
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    sd00006
    Location:491 → 515
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:624 → 778
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  4. XM_029533272.1 → XP_029389132.1  aspartyl/asparaginyl beta-hydroxylase isoform X11

    Conserved Domains (4) summary
    TIGR02795
    Location:400 → 507
    tol_pal_ybgF; tol-pal system protein YbgF
    pfam05279
    Location:61 → 381
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    sd00006
    Location:399 → 427
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:553 → 707
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  5. XM_029533264.1 → XP_029389124.1  aspartyl/asparaginyl beta-hydroxylase isoform X3

    Conserved Domains (4) summary
    pfam05279
    Location:61 → 366
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    TIGR02917
    Location:381 → 564
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:501 → 525
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:634 → 788
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  6. XM_029533267.1 → XP_029389127.1  aspartyl/asparaginyl beta-hydroxylase isoform X6

    Conserved Domains (5) summary
    TIGR02521
    Location:444 → 527
    type_IV_pilW; type IV pilus biogenesis/stability protein PilW
    TIGR02795
    Location:352 → 462
    tol_pal_ybgF; tol-pal system protein YbgF
    pfam05279
    Location:61 → 333
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    sd00006
    Location:468 → 492
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:601 → 755
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  7. XM_029533262.1 → XP_029389122.1  aspartyl/asparaginyl beta-hydroxylase isoform X1

    Conserved Domains (5) summary
    TIGR02521
    Location:492 → 575
    type_IV_pilW; type IV pilus biogenesis/stability protein PilW
    TIGR02795
    Location:400 → 510
    tol_pal_ybgF; tol-pal system protein YbgF
    pfam05279
    Location:61 → 381
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    sd00006
    Location:516 → 540
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:649 → 803
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  8. XM_029533271.1 → XP_029389131.1  aspartyl/asparaginyl beta-hydroxylase isoform X9

    Conserved Domains (5) summary
    TIGR02521
    Location:429 → 512
    type_IV_pilW; type IV pilus biogenesis/stability protein PilW
    TIGR02795
    Location:337 → 447
    tol_pal_ybgF; tol-pal system protein YbgF
    pfam05279
    Location:61 → 318
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    sd00006
    Location:453 → 477
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:586 → 740
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  9. XM_029533270.1 → XP_029389130.1  aspartyl/asparaginyl beta-hydroxylase isoform X8

    Conserved Domains (5) summary
    TIGR02521
    Location:430 → 513
    type_IV_pilW; type IV pilus biogenesis/stability protein PilW
    TIGR02795
    Location:338 → 448
    tol_pal_ybgF; tol-pal system protein YbgF
    pfam05279
    Location:61 → 319
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    sd00006
    Location:454 → 478
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:587 → 741
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  10. XM_029533275.1 → XP_029389135.1  aspartyl/asparaginyl beta-hydroxylase isoform X14

    Conserved Domains (4) summary
    pfam05279
    Location:25 → 268
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    TIGR02917
    Location:283 → 466
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:403 → 427
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:536 → 690
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  11. XM_029533276.1 → XP_029389136.1  aspartyl/asparaginyl beta-hydroxylase isoform X15

    Conserved Domains (5) summary
    TIGR02521
    Location:368 → 451
    type_IV_pilW; type IV pilus biogenesis/stability protein PilW
    TIGR02795
    Location:276 → 386
    tol_pal_ybgF; tol-pal system protein YbgF
    pfam05279
    Location:25 → 257
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    sd00006
    Location:392 → 416
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:525 → 679
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  12. XM_029533274.1 → XP_029389134.1  aspartyl/asparaginyl beta-hydroxylase isoform X13

    Conserved Domains (5) summary
    TIGR02521
    Location:393 → 476
    type_IV_pilW; type IV pilus biogenesis/stability protein PilW
    TIGR02795
    Location:301 → 411
    tol_pal_ybgF; tol-pal system protein YbgF
    pfam05279
    Location:25 → 282
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    sd00006
    Location:417 → 441
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:550 → 704
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  13. XM_029533268.1 → XP_029389128.1  aspartyl/asparaginyl beta-hydroxylase isoform X7

    Conserved Domains (4) summary
    pfam05279
    Location:25 → 330
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    TIGR02917
    Location:345 → 528
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:465 → 489
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:598 → 752
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  14. XM_029533273.1 → XP_029389133.1  aspartyl/asparaginyl beta-hydroxylase isoform X12

    Conserved Domains (5) summary
    TIGR02521
    Location:394 → 477
    type_IV_pilW; type IV pilus biogenesis/stability protein PilW
    TIGR02795
    Location:302 → 412
    tol_pal_ybgF; tol-pal system protein YbgF
    pfam05279
    Location:25 → 283
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    sd00006
    Location:418 → 442
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:551 → 705
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  15. XM_029533266.1 → XP_029389126.1  aspartyl/asparaginyl beta-hydroxylase isoform X5

    Conserved Domains (5) summary
    TIGR02521
    Location:456 → 539
    type_IV_pilW; type IV pilus biogenesis/stability protein PilW
    TIGR02795
    Location:364 → 474
    tol_pal_ybgF; tol-pal system protein YbgF
    pfam05279
    Location:25 → 345
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    sd00006
    Location:480 → 504
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:613 → 767
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  16. XM_021221965.2 → XP_021077624.1  aspartyl/asparaginyl beta-hydroxylase isoform X16

    Related
    MGP_PahariEiJ_P0057063, MGP_PahariEiJ_T0057063.1
    Conserved Domains (1) summary
    pfam05279
    Location:61 → 305
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  17. XM_021221967.1 → XP_021077626.1  aspartyl/asparaginyl beta-hydroxylase isoform X17

    Related
    MGP_PahariEiJ_P0057059, MGP_PahariEiJ_T0057059.1
    Conserved Domains (1) summary
    pfam05279
    Location:25 → 269
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  18. XM_021221968.1 → XP_021077627.1  aspartyl/asparaginyl beta-hydroxylase isoform X18

    Related
    MGP_PahariEiJ_P0057061, MGP_PahariEiJ_T0057061.1
    Conserved Domains (1) summary
    pfam05279
    Location:25 → 258
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  19. XM_021221969.2 → XP_021077628.1  aspartyl/asparaginyl beta-hydroxylase isoform X19

    Related
    MGP_PahariEiJ_P0057068, MGP_PahariEiJ_T0057068.1
    Conserved Domains (1) summary
    pfam05279
    Location:61 → 223
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  20. XM_021221970.2 → XP_021077629.1  aspartyl/asparaginyl beta-hydroxylase isoform X20

    Conserved Domains (1) summary
    pfam05279
    Location:25 → 202
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  21. XM_021221973.1 → XP_021077632.1  aspartyl/asparaginyl beta-hydroxylase isoform X22

    Related
    MGP_PahariEiJ_P0057067, MGP_PahariEiJ_T0057067.1
    Conserved Domains (1) summary
    pfam05279
    Location:25 → 187
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  22. XM_021221972.2 → XP_021077631.1  aspartyl/asparaginyl beta-hydroxylase isoform X21

    Related
    MGP_PahariEiJ_P0057069, MGP_PahariEiJ_T0057069.1
    Conserved Domains (1) summary
    pfam05279
    Location:61 → 153
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.