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Trmt9b tRNA methyltransferase 9B (putative) [ Mus pahari (shrew mouse) ]

Gene ID: 110336974, updated on 15-Mar-2024

Summary

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Gene symbol
Trmt9b
Gene description
tRNA methyltransferase 9B (putative)
See related
Ensembl:MGP_PahariEiJ_G0021453
Gene type
protein coding
RefSeq status
MODEL
Organism
Mus pahari
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Coelomys
Also known as
Kiaa1456
Orthologs
human mouse all
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Genomic context

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See Trmt9b in Genome Data Viewer
Location:
chromosome: 19
Exon count:
5
Annotation release Status Assembly Chr Location
101 current PAHARI_EIJ_v1.1 (GCF_900095145.1) 19 NC_034608.1 (53551713..53609049)

Chromosome 19 - NC_034608.1Genomic Context describing neighboring genes Neighboring gene LON peptidase N-terminal domain and ring finger 1 Neighboring gene ubiquitin-conjugating enzyme E2 E3-like Neighboring gene DLC1 Rho GTPase activating protein Neighboring gene chromosome 19 C8orf48 homolog

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_034608.1 Chromosome 19 Reference PAHARI_EIJ_v1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables S-adenosylmethionine-dependent methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA wobble uridine modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable tRNA methyltransferase 9B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mus pahari Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PAHARI_EIJ_v1.1

Genomic

  1. NC_034608.1 Reference PAHARI_EIJ_v1.1

    Range
    53551713..53609049
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029532260.1 → XP_029388120.1  probable tRNA methyltransferase 9B isoform X1

    Related
    MGP_PahariEiJ_P0047096, MGP_PahariEiJ_T0047096.1
    Conserved Domains (1) summary
    pfam13649
    Location:48 → 135
    Methyltransf_25; Methyltransferase domain

  2. XM_029532261.1 → XP_029388121.1  probable tRNA methyltransferase 9B isoform X2

Nucleotide Protein
Heading Accession and Version

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