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Rbm17 RNA binding motif protein 17 [ Mus pahari (shrew mouse) ]

Gene ID: 110333802, updated on 15-Mar-2024

Summary

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Gene symbol
Rbm17
Gene description
RNA binding motif protein 17
See related
Ensembl:MGP_PahariEiJ_G0019233
Gene type
protein coding
RefSeq status
MODEL
Organism
Mus pahari
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Coelomys
Orthologs
human mouse all
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Genomic context

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See Rbm17 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
12
Annotation release Status Assembly Chr Location
101 current PAHARI_EIJ_v1.1 (GCF_900095145.1) 16 NC_034605.1 (8671604..8689198, complement)

Chromosome 16 - NC_034605.1Genomic Context describing neighboring genes Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene Neighboring gene 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 Neighboring gene 26S proteasome regulatory subunit 10B pseudogene Neighboring gene interleukin 2 receptor subunit alpha

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_034605.1 Chromosome 16 Reference PAHARI_EIJ_v1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in alternative mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mRNA cis splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of precatalytic spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
splicing factor 45

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mus pahari Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PAHARI_EIJ_v1.1

Genomic

  1. NC_034605.1 Reference PAHARI_EIJ_v1.1

    Range
    8671604..8689198 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021215523.2 → XP_021071182.1  splicing factor 45

    Related
    MGP_PahariEiJ_P0040121, MGP_PahariEiJ_T0040121.1
    Conserved Domains (2) summary
    cd12647
    Location:307 → 401
    RRM_UHM_SPF45; RNA recognition motif in UHM domain of 45 kDa-splicing factor (SPF45) and similar proteins
    pfam01585
    Location:235 → 275
    G-patch; G-patch domain
Nucleotide Protein
Heading Accession and Version

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