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LOC110322838 F-box only protein 6 [ Mus pahari (shrew mouse) ]

Gene ID: 110322838, updated on 25-Jan-2024

Summary

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Gene symbol
LOC110322838
Gene description
F-box only protein 6
See related
Ensembl:MGP_PahariEiJ_G0029143
Gene type
protein coding
RefSeq status
MODEL
Organism
Mus pahari
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Coelomys
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Genomic context

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See LOC110322838 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
7
Annotation release Status Assembly Chr Location
101 current PAHARI_EIJ_v1.1 (GCF_900095145.1) 6 NC_034595.1 (99107340..99114166, complement)

Chromosome 6 - NC_034595.1Genomic Context describing neighboring genes Neighboring gene dorsal inhibitory axon guidance protein Neighboring gene mitotic arrest deficient 2 like 2 Neighboring gene F-box only protein 44 Neighboring gene F-box protein 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_034595.1 Chromosome 6 Reference PAHARI_EIJ_v1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glycoprotein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SCF ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum quality control compartment IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
F-box only protein 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mus pahari Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PAHARI_EIJ_v1.1

Genomic

  1. NC_034595.1 Reference PAHARI_EIJ_v1.1

    Range
    99107340..99114166 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021199677.1 → XP_021055336.1  F-box only protein 6

    Related
    MGP_PahariEiJ_P0080870, MGP_PahariEiJ_T0080870.1
    Conserved Domains (2) summary
    pfam04300
    Location:70 → 248
    FBA; F-box associated region
    pfam12937
    Location:4 → 49
    F-box-like

  2. XM_021199679.2 → XP_021055338.1  F-box only protein 6

    Conserved Domains (2) summary
    pfam04300
    Location:70 → 248
    FBA; F-box associated region
    pfam12937
    Location:4 → 49
    F-box-like

  3. XM_021199675.2 → XP_021055334.1  F-box only protein 6

    Related
    MGP_PahariEiJ_P0080869, MGP_PahariEiJ_T0080869.1
    Conserved Domains (2) summary
    pfam04300
    Location:70 → 248
    FBA; F-box associated region
    pfam12937
    Location:4 → 49
    F-box-like
Nucleotide Protein
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