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Yod1 YOD1 deubiquitinase [ Mus pahari (shrew mouse) ]

Gene ID: 110321891, updated on 15-Mar-2024

Summary

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Gene symbol
Yod1
Gene description
YOD1 deubiquitinase
See related
Ensembl:MGP_PahariEiJ_G0027791
Gene type
protein coding
RefSeq status
MODEL
Organism
Mus pahari
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Coelomys
Orthologs
human mouse all
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Genomic context

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See Yod1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
2
Annotation release Status Assembly Chr Location
101 current PAHARI_EIJ_v1.1 (GCF_900095145.1) 5 NC_034594.1 (105018868..105024735)

Chromosome 5 - NC_034594.1Genomic Context describing neighboring genes Neighboring gene complement component 4 binding protein beta Neighboring gene 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 Neighboring gene chromosome 5 C1orf116 homolog Neighboring gene Fc alpha and mu receptor

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_034594.1 Chromosome 5 Reference PAHARI_EIJ_v1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endoplasmic reticulum unfolded protein response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin thioesterase OTU1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mus pahari Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PAHARI_EIJ_v1.1

Genomic

  1. NC_034594.1 Reference PAHARI_EIJ_v1.1

    Range
    105018868..105024735
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021198475.2 → XP_021054134.1  ubiquitin thioesterase OTU1

    Related
    MGP_PahariEiJ_P0074978, MGP_PahariEiJ_T0074978.1
    Conserved Domains (1) summary
    COG5539
    Location:54 → 342
    COG5539; Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]
Nucleotide Protein
Heading Accession and Version

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