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Ssr2 signal sequence receptor subunit 2 [ Mus pahari (shrew mouse) ]

Gene ID: 110320281, updated on 15-Mar-2024

Summary

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Gene symbol
Ssr2
Gene description
signal sequence receptor subunit 2
See related
Ensembl:MGP_PahariEiJ_G0026619
Gene type
protein coding
RefSeq status
MODEL
Organism
Mus pahari
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Coelomys
Orthologs
human mouse all
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Genomic context

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See Ssr2 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
6
Annotation release Status Assembly Chr Location
101 current PAHARI_EIJ_v1.1 (GCF_900095145.1) 4 NC_034593.1 (79089531..79097664)

Chromosome 4 - NC_034593.1Genomic Context describing neighboring genes Neighboring gene late endosomal/lysosomal adaptor, MAPK and MTOR activator 2 Neighboring gene ubiquilin 4 Neighboring gene uncharacterized LOC115063808 Neighboring gene Rho/Rac guanine nucleotide exchange factor 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_034593.1 Chromosome 4 Reference PAHARI_EIJ_v1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
translocon-associated protein subunit beta

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mus pahari Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PAHARI_EIJ_v1.1

Genomic

  1. NC_034593.1 Reference PAHARI_EIJ_v1.1

    Range
    79089531..79097664
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021196187.1 → XP_021051846.1  translocon-associated protein subunit beta

    Related
    MGP_PahariEiJ_P0069414, MGP_PahariEiJ_T0069414.1
    Conserved Domains (1) summary
    pfam05753
    Location:15 → 179
    TRAP_beta; Translocon-associated protein beta (TRAPB)
Nucleotide Protein
Heading Accession and Version

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