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Tmtc1 transmembrane O-mannosyltransferase targeting cadherins 1 [ Mus pahari (shrew mouse) ]

Gene ID: 110316183, updated on 15-Mar-2024

Summary

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Gene symbol
Tmtc1
Gene description
transmembrane O-mannosyltransferase targeting cadherins 1
See related
Ensembl:MGP_PahariEiJ_G0022832
Gene type
protein coding
RefSeq status
MODEL
Organism
Mus pahari
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Coelomys
Orthologs
human mouse all
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Genomic context

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See Tmtc1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
20
Annotation release Status Assembly Chr Location
101 current PAHARI_EIJ_v1.1 (GCF_900095145.1) 2 NC_034591.1 (162601735..162816728, complement)

Chromosome 2 - NC_034591.1Genomic Context describing neighboring genes Neighboring gene U1 spliceosomal RNA Neighboring gene ERGIC and golgi 2 Neighboring gene 40S ribosomal protein S4, X isoform-like Neighboring gene high mobility group protein B1 pseudogene Neighboring gene importin 8

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_034591.1 Chromosome 2 Reference PAHARI_EIJ_v1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-mannosyl-transferase TMTC1
Names
transmembrane and tetratricopeptide repeat containing 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mus pahari Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PAHARI_EIJ_v1.1

Genomic

  1. NC_034591.1 Reference PAHARI_EIJ_v1.1

    Range
    162601735..162816728 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021190284.2 → XP_021045943.1  protein O-mannosyl-transferase TMTC1 isoform X2

    Related
    MGP_PahariEiJ_P0053282, MGP_PahariEiJ_T0053282.1
    Conserved Domains (3) summary
    TIGR02917
    Location:500 → 904
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:604 → 632
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:351 → 425
    DUF1736; Domain of unknown function (DUF1736)

  2. XM_021190283.1 → XP_021045942.1  protein O-mannosyl-transferase TMTC1 isoform X1

    Related
    MGP_PahariEiJ_P0053281, MGP_PahariEiJ_T0053281.1
    Conserved Domains (3) summary
    TIGR02917
    Location:529 → 942
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:642 → 670
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:351 → 425
    DUF1736; Domain of unknown function (DUF1736)
Nucleotide Protein
Heading Accession and Version

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