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RBPMS RNA binding protein, mRNA processing factor [ Homo sapiens (human) ]

Gene ID: 11030, updated on 7-Apr-2024

Summary

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Official Symbol
RBPMSprovided by HGNC
Official Full Name
RNA binding protein, mRNA processing factorprovided by HGNC
Primary source
HGNC:HGNC:19097
See related
Ensembl:ENSG00000157110 MIM:601558; AllianceGenome:HGNC:19097
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
HERMES
Summary
This gene encodes a member of the RNA recognition motif family of RNA-binding proteins. The RNA recognition motif is between 80-100 amino acids in length and family members contain one to four copies of the motif. The RNA recognition motif consists of two short stretches of conserved sequence, as well as a few highly conserved hydrophobic residues. The encoded protein has a single, putative RNA recognition motif in its N-terminus. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Jun 2013]
Expression
Ubiquitous expression in prostate (RPKM 14.5), ovary (RPKM 13.7) and 23 other tissues See more
Orthologs
mouse all
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Genomic context

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See RBPMS in Genome Data Viewer
Location:
8p12
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (30384541..30572256)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (30663428..30851701)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (30242057..30429773)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene peptidylprolyl isomerase A pseudogene 84 Neighboring gene tubulin beta pseudogene 1 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:30241844-30242514 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:30242515-30243186 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr8:30251401-30252099 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:30252799-30253496 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:30254895-30255593 Neighboring gene RBPMS antisense RNA 1 Neighboring gene Sharpr-MPRA regulatory region 541 Neighboring gene heart enhancer 24 Neighboring gene uncharacterized LOC112268025 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:30284105-30284606 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:30284607-30285106 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:30295211-30295746 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:30303831-30304359 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:30304360-30304887 Neighboring gene Sharpr-MPRA regulatory region 3907 Neighboring gene NANOG hESC enhancer GRCh37_chr8:30310384-30310885 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:30318783-30319578 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:30333285-30333476 Neighboring gene uncharacterized LOC124901929 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:30396143-30396854 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:30396862-30397470 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:30397471-30398079 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:30398080-30398688 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr8:30399297-30399906 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr8:30398689-30399296 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:30400515-30401122 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:30401123-30401730 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27212 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:30406725-30407384 Neighboring gene Sharpr-MPRA regulatory region 2547 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19077 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:30415639-30416140 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:30416141-30416640 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:30422314-30422922 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19078 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19079 Neighboring gene general transcription factor IIE subunit 2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27213 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:30514282-30514953 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19080 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:30515625-30516296 Neighboring gene RNA, U5A small nuclear 3, pseudogene Neighboring gene small integral membrane protein 18 Neighboring gene NANOG hESC enhancer GRCh37_chr8:30560335-30560881 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19082 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:30584261-30584948 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19083 Neighboring gene glutathione-disulfide reductase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. mRNA translational specialization by RBPMS presets the competence for cardiac commitment in hESCs. Bartsch D, et al. Sci Adv, 2023 Mar 29. PMID 36989351, Free PMC Article
  2. Increased Expression of the RBPMS Splice Variants Inhibits Cell Proliferation in Ovarian Cancer Cells. Rabelo-Fernández RJ, et al. Int J Mol Sci, 2022 Nov 25. PMID 36499073, Free PMC Article
  3. Loss of RBPMS in ovarian cancer compromises the efficacy of EGFR inhibitor gefitinib through activating HER2/AKT/mTOR/P70S6K signaling. Li M, et al. Biochem Biophys Res Commun, 2022 Dec 31. PMID 36423381
  4. Reduced RBPMS Levels Promote Cell Proliferation and Decrease Cisplatin Sensitivity in Ovarian Cancer Cells. Rabelo-Fernández RJ, et al. Int J Mol Sci, 2022 Jan 4. PMID 35008958, Free PMC Article
  5. Exploring the molecular basis of RNA recognition by the dimeric RNA-binding protein via molecular simulation methods. Chang S, et al. RNA Biol, 2016 Nov. PMID 27592836, Free PMC Article

See all (56) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. RBPMS regulates cardiomyocyte contraction and cardiac function through RNA alternative splicing.
    Title: RBPMS regulates cardiomyocyte contraction and cardiac function through RNA alternative splicing.
  2. Cell-type specific regulator RBPMS switches alternative splicing via higher-order oligomerization and heterotypic interactions with other splicing regulators.
    Title: Cell-type specific regulator RBPMS switches alternative splicing via higher-order oligomerization and heterotypic interactions with other splicing regulators.
  3. SH3RF2 contributes to cisplatin resistance in ovarian cancer cells by promoting RBPMS degradation.
    Title: SH3RF2 contributes to cisplatin resistance in ovarian cancer cells by promoting RBPMS degradation.
  4. mRNA translational specialization by RBPMS presets the competence for cardiac commitment in hESCs.
    Title: mRNA translational specialization by RBPMS presets the competence for cardiac commitment in hESCs.
  5. Increased Expression of the RBPMS Splice Variants Inhibits Cell Proliferation in Ovarian Cancer Cells.
    Title: Increased Expression of the RBPMS Splice Variants Inhibits Cell Proliferation in Ovarian Cancer Cells.
  6. Loss of RBPMS in ovarian cancer compromises the efficacy of EGFR inhibitor gefitinib through activating HER2/AKT/mTOR/P70S6K signaling.
    Title: Loss of RBPMS in ovarian cancer compromises the efficacy of EGFR inhibitor gefitinib through activating HER2/AKT/mTOR/P70S6K signaling.
  7. Reduced RBPMS Levels Promote Cell Proliferation and Decrease Cisplatin Sensitivity in Ovarian Cancer Cells.
    Title: Reduced RBPMS Levels Promote Cell Proliferation and Decrease Cisplatin Sensitivity in Ovarian Cancer Cells.
  8. the key role of miR-21-3p in CRC
    Title: Inhibition of microRNA-21-3p suppresses proliferation as well as invasion and induces apoptosis by targeting RNA-binding protein with multiple splicing through Smad4/extra cellular signal-regulated protein kinase signalling pathway in human colorectal cancer HCT116 cells.
  9. RBPMS silencing confers resistance to MM cells.
    Title: Dysregulation of EZH2/miR-138 axis contributes to drug resistance in multiple myeloma by downregulating RBPMS.
  10. The possible involvement of the GC box 1 at position - 54 in transcriptional regulation of Rbpms was corroborated by EMSA, which showed formation of a DNA-protein complex in the presence of the oligonucleotide corresponding to this Sp1-binding site.
    Title: RNA-binding protein Rbpms is represented in human retinas by isoforms A and C and its transcriptional regulation involves Sp1-binding site.
Submit: New GeneRIF Correction See all GeneRIFs (17)

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Heritability of submaximal exercise heart rate response to exercise training is accounted for by nine SNPs.
EBI GWAS Catalog

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Clone Names

  • FLJ32971

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables RNA binding HDA PubMed 
enables RNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables mRNA 3'-UTR binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables mRNA CDS binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables mRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables molecular adaptor activity ISS
Inferred from Sequence or Structural Similarity
more info
  
enables pre-mRNA intronic binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein homodimerization activity IPI
Inferred from Physical Interaction
more info
 PubMed 
enables transcription coactivator activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA processing TAS
Traceable Author Statement
more info
 PubMed 
involved_in SMAD protein signal transduction IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
involved_in protein-containing complex assembly ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in regulation of alternative mRNA splicing, via spliceosome ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in response to oxidative stress IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in P-body IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasm IDA
Inferred from Direct Assay
more info
 PubMed 
located_in cytoplasmic stress granule IDA
Inferred from Direct Assay
more info
 PubMed 
located_in cytosol IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleoplasm IDA
Inferred from Direct Assay
more info
  
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
RNA-binding protein with multiple splicing
Names
RNA binding protein with multiple splicing
heart and RRM expressed sequence

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_029534.2 RefSeqGene

    Range
    5002..192717
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001008710.3 → NP_001008710.1  RNA-binding protein with multiple splicing isoform A

    See identical proteins and their annotated locations for NP_001008710.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (1) encodes isoform A. Variants 1 and 4 encode the same isoform.
    Source sequence(s)
    BC003608, BX097929, CN360712, CX165198, CX781149, D84107
    Consensus CDS
    CCDS6077.1
    UniProtKB/Swiss-Prot
    D3DSU9, Q92516, Q92517, Q92518, Q93062, Q96J26
    UniProtKB/TrEMBL
    Q569H2
    Related
    ENSP00000380486.4, ENST00000397323.9
    Conserved Domains (2) summary
    TIGR01628
    Location:64 → 165
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    cd12682
    Location:23 → 98
    RRM_RBPMS; RNA recognition motif (RRM) found in vertebrate RNA-binding protein with multiple splicing (RBP-MS)

  2. NM_001008711.3 → NP_001008711.1  RNA-binding protein with multiple splicing isoform B

    See identical proteins and their annotated locations for NP_001008711.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (2) includes an alternate exon in the 3' coding region which results in a frameshift and an early stop codon, compared to variant 1. The encoded isoform (B) has a longer and distinct C-terminus, compared to isoform A.
    Source sequence(s)
    BC003608, BX097929, CN360712, CX165198, CX781149, D84108
    Consensus CDS
    CCDS34875.1
    UniProtKB/TrEMBL
    Q569H2
    Related
    ENSP00000287771.5, ENST00000287771.9
    Conserved Domains (2) summary
    cd12682
    Location:23 → 98
    RRM_RBPMS; RNA recognition motif in vertebrate RNA-binding protein with multiple splicing (RBP-MS)
    cl25887
    Location:26 → 200
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]

  3. NM_001008712.3 → NP_001008712.1  RNA-binding protein with multiple splicing isoform C

    See identical proteins and their annotated locations for NP_001008712.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (3) lacks several exons and its 3'-terminal exon extends past a splice site that is used in variant 1. The encoded isoform (C) has a longer and distinct C-terminus, compared to isoform A.
    Source sequence(s)
    AI025136, BC003608, CX165198
    Consensus CDS
    CCDS34876.1
    UniProtKB/TrEMBL
    Q569H2
    Related
    ENSP00000340176.4, ENST00000339877.8
    Conserved Domains (2) summary
    TIGR01628
    Location:64 → 187
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    cd12682
    Location:23 → 98
    RRM_RBPMS; RNA recognition motif (RRM) found in vertebrate RNA-binding protein with multiple splicing (RBP-MS)

  4. NM_006867.4 → NP_006858.1  RNA-binding protein with multiple splicing isoform A

    See identical proteins and their annotated locations for NP_006858.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (4) includes an alternate exon in the 3' UTR compared to variant 1. Variants 1 and 4 encode the same isoform (A).
    Source sequence(s)
    BC003608, BX097929, CA425568, CN360712, CX165198, CX781149, D84107
    Consensus CDS
    CCDS6077.1
    UniProtKB/Swiss-Prot
    D3DSU9, Q92516, Q92517, Q92518, Q93062, Q96J26
    UniProtKB/TrEMBL
    Q569H2
    Related
    ENSP00000318102.4, ENST00000320203.8
    Conserved Domains (2) summary
    TIGR01628
    Location:64 → 165
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    cd12682
    Location:23 → 98
    RRM_RBPMS; RNA recognition motif (RRM) found in vertebrate RNA-binding protein with multiple splicing (RBP-MS)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    30384541..30572256
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017012981.3 → XP_016868470.1  RNA-binding protein with multiple splicing isoform X3

  2. XM_017012987.3 → XP_016868476.1  RNA-binding protein with multiple splicing isoform X8

  3. XM_047421276.1 → XP_047277232.1  RNA-binding protein with multiple splicing isoform X2

  4. XM_047421278.1 → XP_047277234.1  RNA-binding protein with multiple splicing isoform X12

  5. XM_047421281.1 → XP_047277237.1  RNA-binding protein with multiple splicing isoform X18

  6. XM_047421277.1 → XP_047277233.1  RNA-binding protein with multiple splicing isoform X10

  7. XM_017012982.2 → XP_016868471.1  RNA-binding protein with multiple splicing isoform X4

    Conserved Domains (1) summary
    cd12682
    Location:23 → 98
    RRM_RBPMS; RNA recognition motif in vertebrate RNA-binding protein with multiple splicing (RBP-MS)

  8. XM_017012980.3 → XP_016868469.1  RNA-binding protein with multiple splicing isoform X1

  9. XM_017012990.3 → XP_016868479.1  RNA-binding protein with multiple splicing isoform X13

  10. XM_024447054.2 → XP_024302822.1  RNA-binding protein with multiple splicing isoform X6

    Conserved Domains (2) summary
    cl17169
    Location:14 → 40
    RRM_SF; RNA recognition motif (RRM) superfamily
    cl27087
    Location:40 → 131
    SPOR; Sporulation related domain

  11. XM_017012989.3 → XP_016868478.1  RNA-binding protein with multiple splicing isoform X11

    UniProtKB/TrEMBL
    Q569H2
    Conserved Domains (1) summary
    cl17169
    Location:23 → 98
    RRM_SF; RNA recognition motif (RRM) superfamily

  12. XM_017012988.3 → XP_016868477.1  RNA-binding protein with multiple splicing isoform X9

    UniProtKB/TrEMBL
    Q569H2
    Conserved Domains (2) summary
    TIGR01628
    Location:64 → 165
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    cl17169
    Location:23 → 98
    RRM_SF; RNA recognition motif (RRM) superfamily

  13. XM_017012992.3 → XP_016868481.1  RNA-binding protein with multiple splicing isoform X17

    Conserved Domains (1) summary
    cd12682
    Location:23 → 98
    RRM_RBPMS; RNA recognition motif in vertebrate RNA-binding protein with multiple splicing (RBP-MS)

  14. XM_047421279.1 → XP_047277235.1  RNA-binding protein with multiple splicing isoform X14

  15. XM_017012984.2 → XP_016868473.1  RNA-binding protein with multiple splicing isoform X5

    UniProtKB/TrEMBL
    B4E3T4
    Related
    ENSP00000428675.1, ENST00000517860.5
    Conserved Domains (1) summary
    cd12682
    Location:23 → 98
    RRM_RBPMS; RNA recognition motif in vertebrate RNA-binding protein with multiple splicing (RBP-MS)

  16. XM_017012985.3 → XP_016868474.1  RNA-binding protein with multiple splicing isoform X7

  17. XM_047421280.1 → XP_047277236.1  RNA-binding protein with multiple splicing isoform X16

  18. XM_024447055.2 → XP_024302823.1  RNA-binding protein with multiple splicing isoform X15

    Conserved Domains (1) summary
    cl17169
    Location:5 → 38
    RRM_SF; RNA recognition motif (RRM) superfamily

RNA

  1. XR_007060693.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    30663428..30851701
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054359616.1 → XP_054215591.1  RNA-binding protein with multiple splicing isoform X3

  2. XM_054359621.1 → XP_054215596.1  RNA-binding protein with multiple splicing isoform X8

  3. XM_054359615.1 → XP_054215590.1  RNA-binding protein with multiple splicing isoform X2

  4. XM_054359625.1 → XP_054215600.1  RNA-binding protein with multiple splicing isoform X12

  5. XM_054359623.1 → XP_054215598.1  RNA-binding protein with multiple splicing isoform X10

  6. XM_054359617.1 → XP_054215592.1  RNA-binding protein with multiple splicing isoform X4

  7. XM_054359614.1 → XP_054215589.1  RNA-binding protein with multiple splicing isoform X1

  8. XM_054359626.1 → XP_054215601.1  RNA-binding protein with multiple splicing isoform X13

  9. XM_054359624.1 → XP_054215599.1  RNA-binding protein with multiple splicing isoform X11

  10. XM_054359622.1 → XP_054215597.1  RNA-binding protein with multiple splicing isoform X9

  11. XM_054359630.1 → XP_054215605.1  RNA-binding protein with multiple splicing isoform X17

  12. XM_054359619.1 → XP_054215594.1  RNA-binding protein with multiple splicing isoform X5

    UniProtKB/TrEMBL
    B4E3T4

  13. XM_054359618.1 → XP_054215593.1  RNA-binding protein with multiple splicing isoform X19

  14. XM_054359627.1 → XP_054215602.1  RNA-binding protein with multiple splicing isoform X20

  15. XM_054359628.1 → XP_054215603.1  RNA-binding protein with multiple splicing isoform X15

  16. XM_054359620.1 → XP_054215595.1  RNA-binding protein with multiple splicing isoform X7

  17. XM_054359629.1 → XP_054215604.1  RNA-binding protein with multiple splicing isoform X16

RNA

  1. XR_008487799.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q93062.1 GenPept UniProtKB/Swiss-Prot:Q93062

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