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Rpn1 ribophorin I [ Mus caroli (Ryukyu mouse) ]

Gene ID: 110296366, updated on 15-Mar-2024

Summary

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Gene symbol
Rpn1
Gene description
ribophorin I
See related
Ensembl:MGP_CAROLIEiJ_G0028624
Gene type
protein coding
RefSeq status
MODEL
Organism
Mus caroli
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Orthologs
human mouse all
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Genomic context

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See Rpn1 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
10
Annotation release Status Assembly Chr Location
101 current CAROLI_EIJ_v1.1 (GCF_900094665.1) 6 NC_034575.1 (84182485..84201492)

Chromosome 6 - NC_034575.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115031288 Neighboring gene RAB7A, member RAS oncogene family Neighboring gene GATA binding protein 2 Neighboring gene DnaJ heat shock protein family (Hsp40) member B8

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_034575.1 Chromosome 6 Reference CAROLI_EIJ_v1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in protein N-linked glycosylation via asparagine IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of oligosaccharyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mus caroli Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CAROLI_EIJ_v1.1 Primary Assembly

Genomic

  1. NC_034575.1 Reference CAROLI_EIJ_v1.1 Primary Assembly

    Range
    84182485..84201492
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021165036.2 → XP_021020695.1  dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1

    UniProtKB/TrEMBL
    A0A6P5Q2H6
    Related
    MGP_CAROLIEiJ_P0074888, MGP_CAROLIEiJ_T0074888.1
    Conserved Domains (2) summary
    pfam04597
    Location:34 → 458
    Ribophorin_I; Ribophorin I
    pfam10482
    Location:520 → 590
    CtIP_N; tumor-suppressor protein CtIP N-terminal domain
Nucleotide Protein
Heading Accession and Version

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