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Polr1a RNA polymerase I subunit A [ Mus caroli (Ryukyu mouse) ]

Gene ID: 110296160, updated on 15-Mar-2024

Summary

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Gene symbol
Polr1a
Gene description
RNA polymerase I subunit A
See related
Ensembl:MGP_CAROLIEiJ_G0028494
Gene type
protein coding
RefSeq status
MODEL
Organism
Mus caroli
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Orthologs
human mouse all
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Genomic context

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See Polr1a in Genome Data Viewer
Location:
chromosome: 6
Exon count:
35
Annotation release Status Assembly Chr Location
101 current CAROLI_EIJ_v1.1 (GCF_900094665.1) 6 NC_034575.1 (68796817..68860316)

Chromosome 6 - NC_034575.1Genomic Context describing neighboring genes Neighboring gene inner membrane mitochondrial protein Neighboring gene 60S ribosomal protein L7a pseudogene Neighboring gene small nucleolar RNA SNORD94 Neighboring gene pentatricopeptide repeat domain 3 Neighboring gene uncharacterized LOC110296161 Neighboring gene spermine synthase pseudogene Neighboring gene 60S ribosomal protein L39-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_034575.1 Chromosome 6 Reference CAROLI_EIJ_v1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-directed 5'-3' RNA polymerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase I complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA-directed RNA polymerase I subunit RPA1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mus caroli Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CAROLI_EIJ_v1.1 Primary Assembly

Genomic

  1. NC_034575.1 Reference CAROLI_EIJ_v1.1 Primary Assembly

    Range
    68796817..68860316
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021164727.2 → XP_021020386.1  DNA-directed RNA polymerase I subunit RPA1 isoform X2

    UniProtKB/TrEMBL
    A0A6P5PQ32
    Related
    MGP_CAROLIEiJ_P0074277, MGP_CAROLIEiJ_T0074277.1
    Conserved Domains (2) summary
    cd01435
    Location:16 → 1011
    RNAP_I_RPA1_N; Largest subunit (RPA1) of eukaryotic RNA polymerase I (RNAP I), N-terminal domain
    pfam04998
    Location:965 → 1667
    RNA_pol_Rpb1_5; RNA polymerase Rpb1, domain 5

  2. XM_029478609.1 → XP_029334469.1  DNA-directed RNA polymerase I subunit RPA1 isoform X1

    UniProtKB/TrEMBL
    A0A6P7R551
Nucleotide Protein
Heading Accession and Version

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