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Ubxn2b UBX domain protein 2B [ Mus caroli (Ryukyu mouse) ]

Gene ID: 110293116, updated on 15-Mar-2024

Summary

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Gene symbol
Ubxn2b
Gene description
UBX domain protein 2B
See related
Ensembl:MGP_CAROLIEiJ_G0025790
Gene type
protein coding
RefSeq status
MODEL
Organism
Mus caroli
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Orthologs
human mouse all
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Genomic context

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See Ubxn2b in Genome Data Viewer
Location:
chromosome: 4
Exon count:
9
Annotation release Status Assembly Chr Location
101 current CAROLI_EIJ_v1.1 (GCF_900094665.1) 4 NC_034573.1 (2466060..2492501)

Chromosome 4 - NC_034573.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA17 Neighboring gene family with sequence similarity 110 member B Neighboring gene ubiquitin domain-containing protein 2 pseudogene Neighboring gene uncharacterized LOC115030889 Neighboring gene cholesterol 7-alpha-monooxygenase Neighboring gene U6 spliceosomal RNA Neighboring gene syndecan binding protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_034573.1 Chromosome 4 Reference CAROLI_EIJ_v1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Golgi organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in autophagosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in membrane fusion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear membrane reassembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UBX domain-containing protein 2B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mus caroli Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CAROLI_EIJ_v1.1 Primary Assembly

Genomic

  1. NC_034573.1 Reference CAROLI_EIJ_v1.1 Primary Assembly

    Range
    2466060..2492501
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021160893.2 → XP_021016552.1  UBX domain-containing protein 2B isoform X1

    UniProtKB/TrEMBL
    A0A6P5PG03
    Related
    MGP_CAROLIEiJ_P0061340, MGP_CAROLIEiJ_T0061340.1
    Conserved Domains (2) summary
    smart00553
    Location:140 → 232
    SEP; Domain present in Saccharomyces cerevisiae Shp1, Drosophila melanogaster eyes closed gene (eyc), and vertebrate p47
    cl28922
    Location:250 → 331
    Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold

  2. XM_029476615.1 → XP_029332475.1  UBX domain-containing protein 2B isoform X2

    UniProtKB/TrEMBL
    A0A6P7R6H4
Nucleotide Protein
Heading Accession and Version

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