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Kirrel1 kirre like nephrin family adhesion molecule 1 [ Mus caroli (Ryukyu mouse) ]

Gene ID: 110290774, updated on 15-Mar-2024

Summary

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Gene symbol
Kirrel1
Gene description
kirre like nephrin family adhesion molecule 1
See related
Ensembl:MGP_CAROLIEiJ_G0025131
Gene type
protein coding
RefSeq status
MODEL
Organism
Mus caroli
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Kirrel
Orthologs
human mouse all
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Genomic context

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See Kirrel1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
16
Annotation release Status Assembly Chr Location
101 current CAROLI_EIJ_v1.1 (GCF_900094665.1) 3 NC_034572.1 (79861694..79957894, complement)

Chromosome 3 - NC_034572.1Genomic Context describing neighboring genes Neighboring gene aminoacyl tRNA synthase complex-interacting multifunctional protein 1 pseudogene Neighboring gene small nucleolar RNA SNORA17 Neighboring gene Fc receptor-like protein 2 Neighboring gene CD5 molecule like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_034572.1 Chromosome 3 Reference CAROLI_EIJ_v1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
kin of IRRE-like protein 1
Names
kin of IRRE like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mus caroli Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CAROLI_EIJ_v1.1 Primary Assembly

Genomic

  1. NC_034572.1 Reference CAROLI_EIJ_v1.1 Primary Assembly

    Range
    79861694..79957894 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021157514.1 → XP_021013173.1  kin of IRRE-like protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A6P5P8N6
    Related
    MGP_CAROLIEiJ_P0058243, MGP_CAROLIEiJ_T0058243.1
    Conserved Domains (4) summary
    cd05759
    Location:170 → 251
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    cd05898
    Location:423 → 520
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    pfam13927
    Location:340 → 405
    Ig_3; Immunoglobulin domain
    cl11960
    Location:54 → 148
    Ig; Immunoglobulin domain

  2. XM_021157515.1 → XP_021013174.1  kin of IRRE-like protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A6P5P8N6
    Related
    MGP_CAROLIEiJ_P0058244, MGP_CAROLIEiJ_T0058244.1
    Conserved Domains (4) summary
    cd05759
    Location:170 → 251
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    cd05898
    Location:423 → 520
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    pfam13927
    Location:340 → 405
    Ig_3; Immunoglobulin domain
    cl11960
    Location:54 → 148
    Ig; Immunoglobulin domain

  3. XM_029475393.1 → XP_029331253.1  kin of IRRE-like protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A6P7QQ87

  4. XM_029475391.1 → XP_029331251.1  kin of IRRE-like protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A6P7R0A4

  5. XM_029475392.1 → XP_029331252.1  kin of IRRE-like protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A6P7R0A4

  6. XM_029475394.1 → XP_029331254.1  kin of IRRE-like protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A6P7QWU2
    Related
    MGP_CAROLIEiJ_P0058245, MGP_CAROLIEiJ_T0058245.1
Nucleotide Protein
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