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NGRN neugrin, neurite outgrowth associated [ Sus scrofa (pig) ]

Gene ID: 110261557, updated on 15-Mar-2024

Summary

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Gene symbol
NGRN
Gene description
neugrin, neurite outgrowth associated
See related
Ensembl:ENSSSCG00000055255
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in ovary (RPKM 13.2), spleen (RPKM 6.1) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See NGRN in Genome Data Viewer
Location:
chromosome: 7
Exon count:
4
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 7 NC_010449.5 (55824625..55835464)

Chromosome 7 - NC_010449.5Genomic Context describing neighboring genes Neighboring gene GDP-D-glucose phosphorylase 1 Neighboring gene tubulin polyglutamylase TTLL13-like Neighboring gene uncharacterized LOC110261558 Neighboring gene VPS33B late endosome and lysosome associated Neighboring gene protein regulator of cytokinesis 1 Neighboring gene uncharacterized LOC110261561

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_010449.5 Chromosome 7 Reference Sscrofa11.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
neugrin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010449.5 Reference Sscrofa11.1 Primary Assembly

    Range
    55824625..55835464
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021098987.1 → XP_020954646.1  neugrin

    UniProtKB/TrEMBL
    A0A4X1U0E7, A0A8D0WVN3, A0A8D0ZCC9, A0A8W4FDW2
    Related
    ENSSSCP00000077044.1, ENSSSCT00000097041.1
    Conserved Domains (1) summary
    pfam06413
    Location:73 → 296
    Neugrin
Nucleotide Protein
Heading Accession and Version

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