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ALPK3 alpha kinase 3 [ Sus scrofa (pig) ]

Gene ID: 110261548, updated on 15-Mar-2024

Summary

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Gene symbol
ALPK3
Gene description
alpha kinase 3
See related
Ensembl:ENSSSCG00000041322
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Biased expression in psoas major muscle (RPKM 91.5), longissimus dorsi muscle (RPKM 83.3) and 2 other tissues See more
Orthologs
human mouse all
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Genomic context

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See ALPK3 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
14
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 7 NC_010449.5 (52667342..52718775, complement)

Chromosome 7 - NC_010449.5Genomic Context describing neighboring genes Neighboring gene phosphodiesterase 8A Neighboring gene microRNA mir-9848 Neighboring gene solute carrier family 28 member 1 Neighboring gene ubiquitin-40S ribosomal protein S27a pseudogene Neighboring gene zinc finger protein 592 Neighboring gene uncharacterized LOC110261550

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_010449.5 Chromosome 7 Reference Sscrofa11.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cardiac muscle cell development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-protein kinase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010449.5 Reference Sscrofa11.1 Primary Assembly

    Range
    52667342..52718775 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021098900.1 → XP_020954559.1  alpha-protein kinase 3

    UniProtKB/TrEMBL
    A0A287ABZ9, A0A480EDG3, A0A8D0UYQ5
    Related
    ENSSSCP00000041544.3, ENSSSCT00000050612.3
    Conserved Domains (5) summary
    smart00811
    Location:1369 → 1591
    Alpha_kinase; Alpha-kinase family
    pfam07679
    Location:77 → 169
    I-set; Immunoglobulin I-set domain
    cd00096
    Location:1280 → 1333
    Ig; Immunoglobulin domain
    cl26386
    Location:432 → 865
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III
    cl27975
    Location:361 → 640
    EBV-NA3; Epstein-Barr virus nuclear antigen 3 (EBNA-3)
Nucleotide Protein
Heading Accession and Version

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