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TRIM28 tripartite motif containing 28 [ Sus scrofa (pig) ]

Gene ID: 110261332, updated on 17-Aug-2024

Summary

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Official Symbol
TRIM28provided by VGNC
Official Full Name
tripartite motif containing 28provided by VGNC
Primary source
VGNC:VGNC:94403
See related
Ensembl:ENSSSCG00000037920
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in ovary (RPKM 70.5), spleen (RPKM 43.9) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See TRIM28 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
17
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 6 NC_010448.4 (63094382..63101532)

Chromosome 6 - NC_010448.4Genomic Context describing neighboring genes Neighboring gene solute carrier family 27 member 5 Neighboring gene zinc finger and BTB domain containing 45 Neighboring gene charged multivesicular body protein 2A Neighboring gene ubiquitin conjugating enzyme E2 M

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_010448.4 Chromosome 6 Reference Sscrofa11.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription corepressor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription intermediary factor 1-beta

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010448.4 Reference Sscrofa11.1 Primary Assembly

    Range
    63094382..63101532
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021097345.1 → XP_020953004.1  transcription intermediary factor 1-beta isoform X2

    UniProtKB/TrEMBL
    A0A287BNE9, A0A8D1AHL9, A0A8D1NNP6, A0A8D1RKN8
    Related
    ENSSSCP00000057601.2, ENSSSCT00000047862.3
    Conserved Domains (6) summary
    cd05502
    Location:697 → 803
    Bromo_tif1_like; Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or ...
    smart00502
    Location:253 → 379
    BBC; B-Box C-terminal domain
    smart00336
    Location:149 → 185
    BBOX; B-Box-type zinc finger
    cd00021
    Location:208 → 246
    BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
    cd15623
    Location:628 → 670
    PHD_TIF1beta; PHD finger found in transcription intermediary factor 1-beta (TIF1-beta)
    cd16765
    Location:63 → 125
    RING-HC_TIF1beta; RING finger, HC subclass, found in transcription inknown asiary factor 1-beta (TIF1-beta)

  2. XM_021097344.1 → XP_020953003.1  transcription intermediary factor 1-beta isoform X1

    UniProtKB/TrEMBL
    A0A4X1W3I5
    Conserved Domains (6) summary
    cd05502
    Location:722 → 828
    Bromo_tif1_like; Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or ...
    smart00502
    Location:253 → 379
    BBC; B-Box C-terminal domain
    smart00336
    Location:149 → 185
    BBOX; B-Box-type zinc finger
    cd00021
    Location:208 → 246
    BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
    cd15623
    Location:627 → 695
    PHD_TIF1beta; PHD finger found in transcription intermediary factor 1-beta (TIF1-beta)
    cd16765
    Location:63 → 125
    RING-HC_TIF1beta; RING finger, HC subclass, found in transcription inknown asiary factor 1-beta (TIF1-beta)

  3. XM_021097346.1 → XP_020953005.1  transcription intermediary factor 1-beta isoform X3

    UniProtKB/TrEMBL
    A0A4X1W3I5, A0A8D1YFU1
    Conserved Domains (6) summary
    cd05502
    Location:696 → 802
    Bromo_tif1_like; Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or ...
    smart00502
    Location:253 → 379
    BBC; B-Box C-terminal domain
    smart00336
    Location:149 → 185
    BBOX; B-Box-type zinc finger
    cd00021
    Location:208 → 246
    BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
    cd15623
    Location:627 → 669
    PHD_TIF1beta; PHD finger found in transcription intermediary factor 1-beta (TIF1-beta)
    cd16765
    Location:63 → 125
    RING-HC_TIF1beta; RING finger, HC subclass, found in transcription inknown asiary factor 1-beta (TIF1-beta)
Nucleotide Protein
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