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ZNF331 zinc finger protein 331 [ Sus scrofa (pig) ]

Gene ID: 110261294, updated on 15-Mar-2024

Summary

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Gene symbol
ZNF331
Gene description
zinc finger protein 331
See related
Ensembl:ENSSSCG00000031793
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in ovary (RPKM 2.2), kidney (RPKM 2.0) and 8 other tissues See more
Orthologs
human all
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Genomic context

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See ZNF331 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
8
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 6 NC_010448.4 (56595906..56611447, complement)

Chromosome 6 - NC_010448.4Genomic Context describing neighboring genes Neighboring gene cationic amino acid transporter 3-like Neighboring gene divergent-paired related homeobox Neighboring gene zinc finger protein 501-like Neighboring gene zinc finger protein 345-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_010448.4 Chromosome 6 Reference Sscrofa11.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein 331

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010448.4 Reference Sscrofa11.1 Primary Assembly

    Range
    56595906..56611447 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021097273.1 → XP_020952932.1  zinc finger protein 331 isoform X2

    Conserved Domains (3) summary
    COG5048
    Location:173 → 317
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:177 → 197
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:5 → 45
    KRAB; KRAB box

  2. XM_021097269.1 → XP_020952928.1  zinc finger protein 331 isoform X1

    UniProtKB/TrEMBL
    A0A480VWU4, A0A4X1TYP0, A0A8D0RAC4
    Related
    ENSSSCP00000077692.1, ENSSSCT00000094385.1
    Conserved Domains (3) summary
    COG5048
    Location:130 → 442
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:302 → 322
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:5 → 45
    KRAB; KRAB box

  3. XM_021097271.1 → XP_020952930.1  zinc finger protein 331 isoform X1

    UniProtKB/TrEMBL
    A0A480VWU4, A0A4X1TYP0, A0A8D0RAC4
    Conserved Domains (3) summary
    COG5048
    Location:130 → 442
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:302 → 322
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:5 → 45
    KRAB; KRAB box

  4. XM_021097270.1 → XP_020952929.1  zinc finger protein 331 isoform X1

    UniProtKB/TrEMBL
    A0A480VWU4, A0A4X1TYP0, A0A8D0RAC4
    Conserved Domains (3) summary
    COG5048
    Location:130 → 442
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:302 → 322
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:5 → 45
    KRAB; KRAB box

  5. XM_021097272.1 → XP_020952931.1  zinc finger protein 331 isoform X1

    UniProtKB/TrEMBL
    A0A480VWU4, A0A4X1TYP0, A0A8D0RAC4
    Related
    ENSSSCP00000039222.2, ENSSSCT00000059412.3
    Conserved Domains (3) summary
    COG5048
    Location:130 → 442
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:302 → 322
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:5 → 45
    KRAB; KRAB box
Nucleotide Protein
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