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WTIP WT1 interacting protein [ Sus scrofa (pig) ]

Gene ID: 110261274, updated on 17-Aug-2024

Summary

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Official Symbol
WTIPprovided by VGNC
Official Full Name
WT1 interacting proteinprovided by VGNC
Primary source
VGNC:VGNC:94985
See related
Ensembl:ENSSSCG00000039166
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in ovary (RPKM 11.4), lung (RPKM 10.7) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See WTIP in Genome Data Viewer
Location:
chromosome: 6
Exon count:
8
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 6 NC_010448.4 (44150875..44178378)

Chromosome 6 - NC_010448.4Genomic Context describing neighboring genes Neighboring gene programmed cell death 2 like Neighboring gene ubiquitin like modifier activating enzyme 2 Neighboring gene uncharacterized LOC110260980 Neighboring gene major allergen I polypeptide chain 1-like Neighboring gene major allergen I polypeptide chain 2-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_010448.4 Chromosome 6 Reference Sscrofa11.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transcription corepressor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of hippo signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of miRNA-mediated gene silencing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to hypoxia IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Wilms tumor protein 1-interacting protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010448.4 Reference Sscrofa11.1 Primary Assembly

    Range
    44150875..44178378
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021097104.1 → XP_020952763.1  Wilms tumor protein 1-interacting protein isoform X1

    UniProtKB/TrEMBL
    A0A287AUF5, A0A8D1MSY7
    Related
    ENSSSCP00000047564.1, ENSSSCT00000057376.3
    Conserved Domains (4) summary
    cd09352
    Location:229 → 282
    LIM1_Ajuba_like; The first LIM domain of Ajuba-like proteins
    cd09355
    Location:294 → 346
    LIM2_Ajuba_like; The second LIM domain of Ajuba-like proteins
    cl02475
    Location:354 → 407
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
    cl26386
    Location:72 → 202
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III

  2. XM_021097105.1 → XP_020952764.1  Wilms tumor protein 1-interacting protein isoform X2

    UniProtKB/TrEMBL
    A0A8D1BE71, A0A8D1MTD2, A0A8D1V917, A0A8D2CA74
    Conserved Domains (3) summary
    cd09352
    Location:229 → 282
    LIM1_Ajuba_like; The first LIM domain of Ajuba-like proteins
    cd09355
    Location:294 → 346
    LIM2_Ajuba_like; The second LIM domain of Ajuba-like proteins
    cl26386
    Location:72 → 202
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III
Nucleotide Protein
Heading Accession and Version

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