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C6H16orf46 chromosome 6 C16orf46 homolog [ Sus scrofa (pig) ]

Gene ID: 110261259, updated on 17-Aug-2024

Summary

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Official Symbol
C6H16orf46provided by VGNC
Official Full Name
chromosome 6 C16orf46 homologprovided by VGNC
Primary source
VGNC:VGNC:86051
See related
Ensembl:ENSSSCG00000035388
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Low expression observed in reference dataset See more
Orthologs
human mouse all
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Genomic context

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See C6H16orf46 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
5
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 6 NC_010448.4 (7189026..7208669)

Chromosome 6 - NC_010448.4Genomic Context describing neighboring genes Neighboring gene polycystin 1 like 2 Neighboring gene glycine cleavage system protein H Neighboring gene ATM interactor Neighboring gene centromere protein N

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_010448.4 Chromosome 6 Reference Sscrofa11.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
uncharacterized protein C16orf46 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010448.4 Reference Sscrofa11.1 Primary Assembly

    Range
    7189026..7208669
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021097048.1 → XP_020952707.1  uncharacterized protein C16orf46 homolog isoform X1

    UniProtKB/TrEMBL
    A0A481CMH6, A0A4X1T0J8, A0A8D1MDD6, A0A8D2BYH3
    Conserved Domains (1) summary
    pfam15032
    Location:1 → 400
    DUF4529; Protein of unknown function (DUF4529)

  2. XM_021097050.1 → XP_020952709.1  uncharacterized protein C16orf46 homolog isoform X3

    UniProtKB/TrEMBL
    A0A8D1DSA2
    Conserved Domains (1) summary
    pfam15032
    Location:50 → 379
    DUF4529; Protein of unknown function (DUF4529)

  3. XM_021097049.1 → XP_020952708.1  uncharacterized protein C16orf46 homolog isoform X2

    UniProtKB/TrEMBL
    A0A8D0MG82, A0A8D1RK67
    Related
    ENSSSCP00000039481.2, ENSSSCT00000062760.3
    Conserved Domains (1) summary
    pfam15032
    Location:1 → 386
    DUF4529; Protein of unknown function (DUF4529)

  4. XM_021097046.1 → XP_020952705.1  uncharacterized protein C16orf46 homolog isoform X1

    UniProtKB/TrEMBL
    A0A481CMH6, A0A4X1T0J8, A0A8D1MDD6, A0A8D2BYH3
    Related
    ENSSSCP00000076776.1, ENSSSCT00000093466.1
    Conserved Domains (1) summary
    pfam15032
    Location:1 → 400
    DUF4529; Protein of unknown function (DUF4529)

  5. XM_021097047.1 → XP_020952706.1  uncharacterized protein C16orf46 homolog isoform X1

    UniProtKB/TrEMBL
    A0A481CMH6, A0A4X1T0J8, A0A8D1MDD6, A0A8D2BYH3
    Conserved Domains (1) summary
    pfam15032
    Location:1 → 400
    DUF4529; Protein of unknown function (DUF4529)
Nucleotide Protein
Heading Accession and Version

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