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B4GALNT3 beta-1,4-N-acetyl-galactosaminyltransferase 3 [ Sus scrofa (pig) ]

Gene ID: 110260758, updated on 15-Mar-2024

Summary

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Official Symbol
B4GALNT3provided by VGNC
Official Full Name
beta-1,4-N-acetyl-galactosaminyltransferase 3provided by VGNC
Primary source
VGNC:VGNC:85731
See related
Ensembl:ENSSSCG00000033412
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Broad expression in kidney (RPKM 3.2), heart (RPKM 3.2) and 6 other tissues See more
Orthologs
human mouse all
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Genomic context

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See B4GALNT3 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
20
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 5 NC_010447.5 (67772347..67861000)

Chromosome 5 - NC_010447.5Genomic Context describing neighboring genes Neighboring gene lysine demethylase 5A Neighboring gene uncharacterized LOC102165305 Neighboring gene coiled-coil domain containing 77 Neighboring gene uncharacterized LOC102167892 Neighboring gene uncharacterized LOC102157617

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_010447.5 Chromosome 5 Reference Sscrofa11.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: beta-1,4-N-acetylgalactosaminyltransferase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010447.5 Reference Sscrofa11.1 Primary Assembly

    Range
    67772347..67861000
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021092495.1 → XP_020948154.1  LOW QUALITY PROTEIN: beta-1,4-N-acetylgalactosaminyltransferase 3

    UniProtKB/TrEMBL
    A0A287AZV6
    Related
    ENSSSCP00000049389.2, ENSSSCT00000060289.3
    Conserved Domains (2) summary
    pfam07691
    Location:133 → 277
    PA14; PA14 domain
    cl11394
    Location:790 → 986
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
Heading Accession and Version

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