U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LYNX1 Ly6/neurotoxin 1 [ Sus scrofa (pig) ]

Gene ID: 110260197, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Official Symbol
LYNX1provided by VGNC
Official Full Name
Ly6/neurotoxin 1provided by VGNC
Primary source
VGNC:VGNC:108096
See related
Ensembl:ENSSSCG00000031724
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Broad expression in heart (RPKM 50.8), psoas major muscle (RPKM 11.0) and 5 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LYNX1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
4
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 4 NC_010446.5 (1450112..1455000)

Chromosome 4 - NC_010446.5Genomic Context describing neighboring genes Neighboring gene lymphocyte antigen 6 family member K Neighboring gene uncharacterized LOC110260400 Neighboring gene lymphocyte antigen 6 family member D Neighboring gene ly6/PLAUR domain-containing protein 2-like Neighboring gene thioesterase superfamily member 6

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_010446.5 Chromosome 4 Reference Sscrofa11.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

General protein information

Go to the top of the page Help
Preferred Names
ly-6/neurotoxin-like protein 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010446.5 Reference Sscrofa11.1 Primary Assembly

    Range
    1450112..1455000
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021088775.1 → XP_020944434.1  ly-6/neurotoxin-like protein 1

    UniProtKB/TrEMBL
    A0A287B109, A0A8D1GWJ9
    Related
    ENSSSCP00000050110.2, ENSSSCT00000036834.2
    Conserved Domains (1) summary
    cd00117
    Location:21 → 94
    LU; Ly-6 antigen / uPA receptor -like domain; occurs singly in GPI-linked cell-surface glycoproteins (Ly-6 family,CD59, thymocyte B cell antigen, Sgp-2) or as three-fold repeated domain in urokinase-type plasminogen activator receptor. Topology of these ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.