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LY6K lymphocyte antigen 6 family member K [ Sus scrofa (pig) ]

Gene ID: 110260195, updated on 17-Aug-2024

Summary

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Official Symbol
LY6Kprovided by VGNC
Official Full Name
lymphocyte antigen 6 family member Kprovided by VGNC
Primary source
VGNC:VGNC:89904
See related
Ensembl:ENSSSCG00000033594
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Low expression observed in reference dataset See more
Orthologs
human mouse all
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Genomic context

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See LY6K in Genome Data Viewer
Location:
chromosome: 4
Exon count:
6
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 4 NC_010446.5 (1391736..1436059)

Chromosome 4 - NC_010446.5Genomic Context describing neighboring genes Neighboring gene glycosylphosphatidylinositol anchored molecule like Neighboring gene cytochrome P450 family 11 subfamily B member 2 Neighboring gene uncharacterized LOC110260196 Neighboring gene uncharacterized LOC110260400 Neighboring gene lymphocyte antigen 6 family member D Neighboring gene Ly6/neurotoxin 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_010446.5 Chromosome 4 Reference Sscrofa11.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in binding of sperm to zona pellucida IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in acrosomal vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lymphocyte antigen 6K

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010446.5 Reference Sscrofa11.1 Primary Assembly

    Range
    1391736..1436059
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021088773.1 → XP_020944432.1  lymphocyte antigen 6K

    UniProtKB/TrEMBL
    A0A287ALH7, A0A4X1UTL0, A0A8D0LLY8
    Related
    ENSSSCP00000044754.1, ENSSSCT00000064969.2
    Conserved Domains (1) summary
    cd00117
    Location:30 → 111
    LU; Ly-6 antigen / uPA receptor -like domain; occurs singly in GPI-linked cell-surface glycoproteins (Ly-6 family,CD59, thymocyte B cell antigen, Sgp-2) or as three-fold repeated domain in urokinase-type plasminogen activator receptor. Topology of these ...

RNA

  1. XR_002343042.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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