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HS3ST6 heparan sulfate-glucosamine 3-sulfotransferase 6 [ Sus scrofa (pig) ]

Gene ID: 110259947, updated on 17-Aug-2024

Summary

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Official Symbol
HS3ST6provided by VGNC
Official Full Name
heparan sulfate-glucosamine 3-sulfotransferase 6provided by VGNC
Primary source
VGNC:VGNC:88980
See related
Ensembl:ENSSSCG00000031216
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Broad expression in subcutaneous adipose (RPKM 8.8), lung (RPKM 1.1) and 5 other tissues See more
Orthologs
human mouse all
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Genomic context

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See HS3ST6 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
2
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 3 NC_010445.4 (40029927..40038803)

Chromosome 3 - NC_010445.4Genomic Context describing neighboring genes Neighboring gene NADH:ubiquinone oxidoreductase subunit B10 Neighboring gene ribosomal protein L3 like Neighboring gene methionine sulfoxide reductase B1 Neighboring gene meiosis specific with OB-fold Neighboring gene hydroxyacylglutathione hydrolase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_010445.4 Chromosome 3 Reference Sscrofa11.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine 3-sulfotransferase 1 activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparan sulfate glucosamine 3-O-sulfotransferase 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010445.4 Reference Sscrofa11.1 Primary Assembly

    Range
    40029927..40038803
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021086795.1 → XP_020942454.1  heparan sulfate glucosamine 3-O-sulfotransferase 6 isoform X2

    Conserved Domains (1) summary
    pfam00685
    Location:91 → 316
    Sulfotransfer_1; Sulfotransferase domain

  2. XM_021086794.1 → XP_020942453.1  heparan sulfate glucosamine 3-O-sulfotransferase 6 isoform X1

    UniProtKB/TrEMBL
    A0A287AF31, A0A4X1VXR6
    Related
    ENSSSCP00000075621.1, ENSSSCT00000098158.1
    Conserved Domains (1) summary
    pfam00685
    Location:91 → 326
    Sulfotransfer_1; Sulfotransferase domain
Nucleotide Protein
Heading Accession and Version

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