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MYDGF myeloid derived growth factor [ Sus scrofa (pig) ]

Gene ID: 110259358, updated on 17-Aug-2024

Summary

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Official Symbol
MYDGFprovided by VGNC
Official Full Name
myeloid derived growth factorprovided by VGNC
Primary source
VGNC:VGNC:90506
See related
Ensembl:ENSSSCG00000034898
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as
C19orf10
Expression
Ubiquitous expression in ovary (RPKM 33.5), liver (RPKM 27.9) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See MYDGF in Genome Data Viewer
Location:
chromosome: 2
Exon count:
6
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 2 NC_010444.4 (74185042..74202306)

Chromosome 2 - NC_010444.4Genomic Context describing neighboring genes Neighboring gene transfer RNA glycine (anticodon UCC) Neighboring gene dipeptidyl peptidase 9 Neighboring gene DPP9 antisense RNA 1 Neighboring gene TNF alpha induced protein 8 like 1 Neighboring gene semaphorin 6B Neighboring gene uncharacterized LOC110259361

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_010444.4 Chromosome 2 Reference Sscrofa11.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in positive regulation of angiogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of endothelial cell proliferation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
myeloid-derived growth factor
Names
UPF0556 protein C19orf10

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010444.4 Reference Sscrofa11.1 Primary Assembly

    Range
    74185042..74202306
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021084047.1 → XP_020939706.1  myeloid-derived growth factor

    UniProtKB/TrEMBL
    A0A4X1VS94, A0A8D0K4F0, M3UZ63
    Related
    ENSSSCP00000036490.1, ENSSSCT00000059002.3
    Conserved Domains (1) summary
    pfam10572
    Location:31 → 174
    UPF0556; Uncharacterized protein family UPF0556
Nucleotide Protein Strain
Heading Accession and Version

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