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TNRC6A trinucleotide repeat containing adaptor 6A [ Sus scrofa (pig) ]

Gene ID: 110258158, updated on 17-Aug-2024

Summary

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Official Symbol
TNRC6Aprovided by VGNC
Official Full Name
trinucleotide repeat containing adaptor 6Aprovided by VGNC
Primary source
VGNC:VGNC:94292
See related
Ensembl:ENSSSCG00000038870
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in ovary (RPKM 8.4), kidney (RPKM 8.0) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See TNRC6A in Genome Data Viewer
Location:
chromosome: Un
Exon count:
30
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) Unplaced Scaffold NW_018084874.1 (578944..823812, complement)

NW_018084874.1Genomic Context describing neighboring genes Neighboring gene Rho GTPase activating protein 17 Neighboring gene solute carrier family 5 member 11 Neighboring gene RB binding protein 6, ubiquitin ligase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018084874 Unplaced Scaffold Reference Sscrofa11.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in miRNA-mediated post-transcriptional gene silencing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of nuclear-transcribed mRNA poly(A) tail shortening IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
trinucleotide repeat-containing gene 6A protein
Names
trinucleotide repeat containing 6A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NW_018084874.1 Reference Sscrofa11.1 Primary Assembly

    Range
    578944..823812 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021081315.1 → XP_020936974.1  trinucleotide repeat-containing gene 6A protein isoform X1

    UniProtKB/TrEMBL
    A0A4X1UWN9
    Conserved Domains (4) summary
    cd12711
    Location:1839 → 1921
    RRM_TNRC6A; RNA recognition motif in vertebrate GW182 autoantigen
    pfam10427
    Location:1134 → 1259
    Ago_hook; Argonaute hook
    pfam12938
    Location:1354 → 1502
    M_domain; M domain of GW182
    pfam16608
    Location:1563 → 1826
    TNRC6-PABC_bdg; TNRC6-PABC binding domain

  2. XM_021081330.1 → XP_020936989.1  trinucleotide repeat-containing gene 6A protein isoform X14

    UniProtKB/TrEMBL
    A0A8D0Q0M5, A0A8D0Q630
    Conserved Domains (4) summary
    cd12711
    Location:1706 → 1788
    RRM_TNRC6A; RNA recognition motif in vertebrate GW182 autoantigen
    pfam10427
    Location:1050 → 1175
    Ago_hook; Argonaute hook
    pfam12938
    Location:1231 → 1369
    M_domain; M domain of GW182
    pfam16608
    Location:1430 → 1693
    TNRC6-PABC_bdg; TNRC6-PABC binding domain

  3. XM_021081325.1 → XP_020936984.1  trinucleotide repeat-containing gene 6A protein isoform X10

    UniProtKB/TrEMBL
    A0A4X1UWN2
    Conserved Domains (4) summary
    cd12711
    Location:1758 → 1840
    RRM_TNRC6A; RNA recognition motif in vertebrate GW182 autoantigen
    pfam10427
    Location:1102 → 1227
    Ago_hook; Argonaute hook
    pfam12938
    Location:1283 → 1421
    M_domain; M domain of GW182
    pfam16608
    Location:1482 → 1745
    TNRC6-PABC_bdg; TNRC6-PABC binding domain

  4. XM_021081328.1 → XP_020936987.1  trinucleotide repeat-containing gene 6A protein isoform X13

    UniProtKB/TrEMBL
    A0A8D0Y0C9
    Conserved Domains (3) summary
    cd12711
    Location:1731 → 1813
    RRM_TNRC6A; RNA recognition motif in vertebrate GW182 autoantigen
    pfam12938
    Location:1256 → 1394
    M_domain; M domain of GW182
    pfam16608
    Location:1455 → 1718
    TNRC6-PABC_bdg; TNRC6-PABC binding domain

  5. XM_021081321.1 → XP_020936980.1  trinucleotide repeat-containing gene 6A protein isoform X6

    UniProtKB/TrEMBL
    A0A4X1UWN2
    Conserved Domains (4) summary
    cd12711
    Location:1790 → 1872
    RRM_TNRC6A; RNA recognition motif in vertebrate GW182 autoantigen
    pfam10427
    Location:1134 → 1259
    Ago_hook; Argonaute hook
    pfam12938
    Location:1315 → 1453
    M_domain; M domain of GW182
    pfam16608
    Location:1514 → 1777
    TNRC6-PABC_bdg; TNRC6-PABC binding domain

  6. XM_021081337.1 → XP_020936996.1  trinucleotide repeat-containing gene 6A protein isoform X16

    UniProtKB/TrEMBL
    A0A8D1Q6F5, A0A8D2BF24
    Conserved Domains (4) summary
    cd12711
    Location:1477 → 1559
    RRM_TNRC6A; RNA recognition motif in vertebrate GW182 autoantigen
    pfam10427
    Location:821 → 946
    Ago_hook; Argonaute hook
    pfam12938
    Location:1002 → 1140
    M_domain; M domain of GW182
    pfam16608
    Location:1201 → 1464
    TNRC6-PABC_bdg; TNRC6-PABC binding domain

  7. XM_021081327.1 → XP_020936986.1  trinucleotide repeat-containing gene 6A protein isoform X12

    UniProtKB/TrEMBL
    A0A287AKZ0, A0A4X1UWN2, A0A8D1UTQ4
    Related
    ENSSSCP00000044556.3, ENSSSCT00000037676.3
    Conserved Domains (4) summary
    cd12711
    Location:1733 → 1815
    RRM_TNRC6A; RNA recognition motif in vertebrate GW182 autoantigen
    pfam10427
    Location:1077 → 1202
    Ago_hook; Argonaute hook
    pfam12938
    Location:1258 → 1396
    M_domain; M domain of GW182
    pfam16608
    Location:1457 → 1720
    TNRC6-PABC_bdg; TNRC6-PABC binding domain

  8. XM_021081339.1 → XP_020936998.1  trinucleotide repeat-containing gene 6A protein isoform X16

    UniProtKB/TrEMBL
    A0A8D1Q6F5, A0A8D2BF24
    Conserved Domains (4) summary
    cd12711
    Location:1477 → 1559
    RRM_TNRC6A; RNA recognition motif in vertebrate GW182 autoantigen
    pfam10427
    Location:821 → 946
    Ago_hook; Argonaute hook
    pfam12938
    Location:1002 → 1140
    M_domain; M domain of GW182
    pfam16608
    Location:1201 → 1464
    TNRC6-PABC_bdg; TNRC6-PABC binding domain

  9. XM_021081319.1 → XP_020936978.1  trinucleotide repeat-containing gene 6A protein isoform X4

    UniProtKB/TrEMBL
    A0A4X1UWN9
    Conserved Domains (4) summary
    cd12711
    Location:1814 → 1896
    RRM_TNRC6A; RNA recognition motif in vertebrate GW182 autoantigen
    pfam10427
    Location:1109 → 1234
    Ago_hook; Argonaute hook
    pfam12938
    Location:1329 → 1477
    M_domain; M domain of GW182
    pfam16608
    Location:1538 → 1801
    TNRC6-PABC_bdg; TNRC6-PABC binding domain

  10. XM_021081323.1 → XP_020936982.1  trinucleotide repeat-containing gene 6A protein isoform X8

    UniProtKB/TrEMBL
    A0A287BNE0, A0A480S8B4, A0A4X1UWN9
    Related
    ENSSSCP00000057591.2, ENSSSCT00000047880.2
    Conserved Domains (4) summary
    cd12711
    Location:1782 → 1864
    RRM_TNRC6A; RNA recognition motif in vertebrate GW182 autoantigen
    pfam10427
    Location:1077 → 1202
    Ago_hook; Argonaute hook
    pfam12938
    Location:1297 → 1445
    M_domain; M domain of GW182
    pfam16608
    Location:1506 → 1769
    TNRC6-PABC_bdg; TNRC6-PABC binding domain

  11. XM_021081333.1 → XP_020936992.1  trinucleotide repeat-containing gene 6A protein isoform X15

    UniProtKB/TrEMBL
    A0A4X1UY64
    Conserved Domains (4) summary
    cd12711
    Location:1526 → 1608
    RRM_TNRC6A; RNA recognition motif in vertebrate GW182 autoantigen
    pfam10427
    Location:821 → 946
    Ago_hook; Argonaute hook
    pfam12938
    Location:1041 → 1189
    M_domain; M domain of GW182
    pfam16608
    Location:1250 → 1513
    TNRC6-PABC_bdg; TNRC6-PABC binding domain

  12. XM_021081331.1 → XP_020936990.1  trinucleotide repeat-containing gene 6A protein isoform X15

    UniProtKB/TrEMBL
    A0A4X1UY64
    Conserved Domains (4) summary
    cd12711
    Location:1526 → 1608
    RRM_TNRC6A; RNA recognition motif in vertebrate GW182 autoantigen
    pfam10427
    Location:821 → 946
    Ago_hook; Argonaute hook
    pfam12938
    Location:1041 → 1189
    M_domain; M domain of GW182
    pfam16608
    Location:1250 → 1513
    TNRC6-PABC_bdg; TNRC6-PABC binding domain

  13. XM_021081336.1 → XP_020936995.1  trinucleotide repeat-containing gene 6A protein isoform X15

    UniProtKB/TrEMBL
    A0A4X1UY64
    Conserved Domains (4) summary
    cd12711
    Location:1526 → 1608
    RRM_TNRC6A; RNA recognition motif in vertebrate GW182 autoantigen
    pfam10427
    Location:821 → 946
    Ago_hook; Argonaute hook
    pfam12938
    Location:1041 → 1189
    M_domain; M domain of GW182
    pfam16608
    Location:1250 → 1513
    TNRC6-PABC_bdg; TNRC6-PABC binding domain

  14. XM_021081320.1 → XP_020936979.1  trinucleotide repeat-containing gene 6A protein isoform X5

    UniProtKB/TrEMBL
    A0A4X1UWN9
    Conserved Domains (4) summary
    cd12711
    Location:1807 → 1889
    RRM_TNRC6A; RNA recognition motif in vertebrate GW182 autoantigen
    pfam10427
    Location:1102 → 1227
    Ago_hook; Argonaute hook
    pfam12938
    Location:1322 → 1470
    M_domain; M domain of GW182
    pfam16608
    Location:1531 → 1794
    TNRC6-PABC_bdg; TNRC6-PABC binding domain

  15. XM_021081316.1 → XP_020936975.1  trinucleotide repeat-containing gene 6A protein isoform X2

    UniProtKB/TrEMBL
    A0A4X1UWR3
    Conserved Domains (4) summary
    cd12711
    Location:1828 → 1910
    RRM_TNRC6A; RNA recognition motif in vertebrate GW182 autoantigen
    pfam10427
    Location:1134 → 1248
    Ago_hook; Argonaute hook
    pfam12938
    Location:1343 → 1491
    M_domain; M domain of GW182
    pfam16608
    Location:1552 → 1815
    TNRC6-PABC_bdg; TNRC6-PABC binding domain

  16. XM_021081324.1 → XP_020936983.1  trinucleotide repeat-containing gene 6A protein isoform X9

    UniProtKB/TrEMBL
    A0A4X1UWU4
    Conserved Domains (4) summary
    cd12711
    Location:1767 → 1849
    RRM_TNRC6A; RNA recognition motif in vertebrate GW182 autoantigen
    pfam10427
    Location:1134 → 1259
    Ago_hook; Argonaute hook
    pfam12938
    Location:1315 → 1394
    M_domain; M domain of GW182
    pfam16608
    Location:1491 → 1754
    TNRC6-PABC_bdg; TNRC6-PABC binding domain

  17. XM_021081317.1 → XP_020936976.1  trinucleotide repeat-containing gene 6A protein isoform X3

    UniProtKB/TrEMBL
    A0A4X1UWN9
    Conserved Domains (4) summary
    cd12711
    Location:1816 → 1898
    RRM_TNRC6A; RNA recognition motif in vertebrate GW182 autoantigen
    pfam10427
    Location:1134 → 1259
    Ago_hook; Argonaute hook
    pfam12938
    Location:1354 → 1443
    M_domain; M domain of GW182
    pfam16608
    Location:1540 → 1803
    TNRC6-PABC_bdg; TNRC6-PABC binding domain

  18. XM_021081334.1 → XP_020936993.1  trinucleotide repeat-containing gene 6A protein isoform X15

    UniProtKB/TrEMBL
    A0A4X1UY64
    Conserved Domains (4) summary
    cd12711
    Location:1526 → 1608
    RRM_TNRC6A; RNA recognition motif in vertebrate GW182 autoantigen
    pfam10427
    Location:821 → 946
    Ago_hook; Argonaute hook
    pfam12938
    Location:1041 → 1189
    M_domain; M domain of GW182
    pfam16608
    Location:1250 → 1513
    TNRC6-PABC_bdg; TNRC6-PABC binding domain

  19. XM_021081332.1 → XP_020936991.1  trinucleotide repeat-containing gene 6A protein isoform X15

    UniProtKB/TrEMBL
    A0A4X1UY64
    Conserved Domains (4) summary
    cd12711
    Location:1526 → 1608
    RRM_TNRC6A; RNA recognition motif in vertebrate GW182 autoantigen
    pfam10427
    Location:821 → 946
    Ago_hook; Argonaute hook
    pfam12938
    Location:1041 → 1189
    M_domain; M domain of GW182
    pfam16608
    Location:1250 → 1513
    TNRC6-PABC_bdg; TNRC6-PABC binding domain

  20. XM_021081335.1 → XP_020936994.1  trinucleotide repeat-containing gene 6A protein isoform X15

    UniProtKB/TrEMBL
    A0A4X1UY64
    Conserved Domains (4) summary
    cd12711
    Location:1526 → 1608
    RRM_TNRC6A; RNA recognition motif in vertebrate GW182 autoantigen
    pfam10427
    Location:821 → 946
    Ago_hook; Argonaute hook
    pfam12938
    Location:1041 → 1189
    M_domain; M domain of GW182
    pfam16608
    Location:1250 → 1513
    TNRC6-PABC_bdg; TNRC6-PABC binding domain

  21. XM_021081326.1 → XP_020936985.1  trinucleotide repeat-containing gene 6A protein isoform X11

    UniProtKB/TrEMBL
    A0A8D0ICU1
    Conserved Domains (4) summary
    cd12711
    Location:1755 → 1837
    RRM_TNRC6A; RNA recognition motif in vertebrate GW182 autoantigen
    pfam10427
    Location:1050 → 1175
    Ago_hook; Argonaute hook
    pfam12938
    Location:1270 → 1418
    M_domain; M domain of GW182
    pfam16608
    Location:1479 → 1742
    TNRC6-PABC_bdg; TNRC6-PABC binding domain

  22. XM_021081322.1 → XP_020936981.1  trinucleotide repeat-containing gene 6A protein isoform X7

    UniProtKB/TrEMBL
    A0A4X1UWN9
    Conserved Domains (4) summary
    cd12711
    Location:1785 → 1867
    RRM_TNRC6A; RNA recognition motif in vertebrate GW182 autoantigen
    pfam10427
    Location:1080 → 1205
    Ago_hook; Argonaute hook
    pfam12938
    Location:1300 → 1448
    M_domain; M domain of GW182
    pfam16608
    Location:1509 → 1772
    TNRC6-PABC_bdg; TNRC6-PABC binding domain

RNA

  1. XR_002341001.1 RNA Sequence

  2. XR_002341000.1 RNA Sequence

  3. XR_002340999.1 RNA Sequence

Nucleotide Protein
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