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CLEC2L C-type lectin domain family 2 member L [ Sus scrofa (pig) ]

Gene ID: 110257541, updated on 17-Aug-2024

Summary

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Official Symbol
CLEC2Lprovided by VGNC
Official Full Name
C-type lectin domain family 2 member Lprovided by VGNC
Primary source
VGNC:VGNC:86752
See related
Ensembl:ENSSSCG00000038147
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Biased expression in ovary (RPKM 1.2), mixtures (RPKM 1.1) and 4 other tissues See more
Orthologs
human mouse all
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Genomic context

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See CLEC2L in Genome Data Viewer
Location:
chromosome: 18
Exon count:
7
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 18 NC_010460.4 (10155299..10176343, complement)

Chromosome 18 - NC_010460.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110257510 Neighboring gene homeodomain interacting protein kinase 2 Neighboring gene uncharacterized LOC106508201 Neighboring gene DNA topoisomerase 1-like Neighboring gene killer cell lectin like receptor G2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_010460.4 Chromosome 18 Reference Sscrofa11.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
C-type lectin domain family 2 member L

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010460.4 Reference Sscrofa11.1 Primary Assembly

    Range
    10155299..10176343 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021078806.1 → XP_020934465.1  C-type lectin domain family 2 member L

    UniProtKB/TrEMBL
    A0A287AIV6, A0A4X1V4A1, A0A8D1M5E2
    Conserved Domains (1) summary
    cd03593
    Location:101 → 211
    CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)

  2. XM_021078805.1 → XP_020934464.1  C-type lectin domain family 2 member L

    UniProtKB/TrEMBL
    A0A287AIV6, A0A4X1V4A1, A0A8D1M5E2
    Conserved Domains (1) summary
    cd03593
    Location:101 → 211
    CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)

  3. XM_021078804.1 → XP_020934463.1  C-type lectin domain family 2 member L

    UniProtKB/TrEMBL
    A0A287AIV6, A0A4X1V4A1, A0A8D1M5E2
    Related
    ENSSSCP00000043932.1, ENSSSCT00000055787.3
    Conserved Domains (1) summary
    cd03593
    Location:101 → 211
    CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)
Nucleotide Protein
Heading Accession and Version

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