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RPAIN RPA interacting protein [ Sus scrofa (pig) ]

Gene ID: 110256104, updated on 17-Aug-2024

Summary

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Official Symbol
RPAINprovided by VGNC
Official Full Name
RPA interacting proteinprovided by VGNC
Primary source
VGNC:VGNC:92416
See related
Ensembl:ENSSSCG00000036311
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in spleen (RPKM 4.2), ovary (RPKM 3.9) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See RPAIN in Genome Data Viewer
Location:
chromosome: 12
Exon count:
7
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 12 NC_010454.4 (51553130..51562419, complement)

Chromosome 12 - NC_010454.4Genomic Context describing neighboring genes Neighboring gene DEAH-box helicase 33 Neighboring gene complement C1q binding protein Neighboring gene nucleoporin 88 Neighboring gene rabaptin, RAB GTPase binding effector protein 1 Neighboring gene SLP adaptor and CSK interacting membrane protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_010454.4 Chromosome 12 Reference Sscrofa11.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. Comparative analysis of protein coding sequences from human, mouse and the domesticated pig. Jørgensen FG, et al. BMC Biol, 2005 Jan 28. PMID 15679890, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in protein import into nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in PML body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RPA-interacting protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010454.4 Reference Sscrofa11.1 Primary Assembly

    Range
    51553130..51562419 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021067747.1 → XP_020923406.1  RPA-interacting protein

    UniProtKB/TrEMBL
    A0A287AYZ1, A0A8D0SUH1, A0A8D1GBF7
    Related
    ENSSSCP00000049366.1, ENSSSCT00000066010.3
    Conserved Domains (3) summary
    pfam14766
    Location:8 → 46
    RPA_interact_N; Replication protein A interacting N-terminal
    pfam14767
    Location:60 → 124
    RPA_interact_M; Replication protein A interacting middle
    pfam14768
    Location:137 → 217
    RPA_interact_C; Replication protein A interacting C-terminal

RNA

  1. XR_002337336.1 RNA Sequence

  2. XR_002337335.1 RNA Sequence

    Related
    ENSSSCT00000068731.1
Nucleotide Protein
Heading Accession and Version

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