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TLCD2 TLC domain containing 2 [ Sus scrofa (pig) ]

Gene ID: 110256072, updated on 17-Aug-2024

Summary

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Official Symbol
TLCD2provided by VGNC
Official Full Name
TLC domain containing 2provided by VGNC
Primary source
VGNC:VGNC:94011
See related
Ensembl:ENSSSCG00000040205
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Broad expression in kidney (RPKM 7.1), lung (RPKM 3.7) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See TLCD2 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
9
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 12 NC_010454.4 (47904150..47918257, complement)

Chromosome 12 - NC_010454.4Genomic Context describing neighboring genes Neighboring gene scavenger receptor class F member 1 Neighboring gene Rab interacting lysosomal protein Neighboring gene pre-mRNA processing factor 8 Neighboring gene 40S ribosomal protein S15a pseudogene Neighboring gene WD repeat domain 81 Neighboring gene serpin family F member 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_010454.4 Chromosome 12 Reference Sscrofa11.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in membrane assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phospholipid homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plasma membrane organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of membrane lipid distribution IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
TLC domain-containing protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010454.4 Reference Sscrofa11.1 Primary Assembly

    Range
    47904150..47918257 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021067585.1 → XP_020923244.1  TLC domain-containing protein 2 isoform X3

    Conserved Domains (1) summary
    cl02759
    Location:14 → 177
    TRAM_LAG1_CLN8; TLC domain

  2. XM_021067584.1 → XP_020923243.1  TLC domain-containing protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A8D0THH8, A0A8D1U9K0
    Conserved Domains (1) summary
    cl02759
    Location:34 → 184
    TRAM_LAG1_CLN8; TLC domain

  3. XM_021067581.1 → XP_020923240.1  TLC domain-containing protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A287B9V4, A0A4X1U8I3, A0A8D0THH8, A0A8D1ANP1, A0A8D1U9K0
    Related
    ENSSSCP00000053116.1, ENSSSCT00000042140.3
    Conserved Domains (1) summary
    smart00724
    Location:34 → 226
    TLC; TRAM, LAG1 and CLN8 homology domains

  4. XM_021067580.1 → XP_020923239.1  TLC domain-containing protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A287B9V4, A0A4X1U8I3, A0A8D0THH8, A0A8D1ANP1, A0A8D1U9K0
    Conserved Domains (1) summary
    smart00724
    Location:34 → 226
    TLC; TRAM, LAG1 and CLN8 homology domains

  5. XM_021067583.1 → XP_020923242.1  TLC domain-containing protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A287B9V4, A0A4X1U8I3, A0A8D0THH8, A0A8D1ANP1, A0A8D1U9K0
    Conserved Domains (1) summary
    smart00724
    Location:34 → 226
    TLC; TRAM, LAG1 and CLN8 homology domains

RNA

  1. XR_002337302.1 RNA Sequence

  2. XR_002337301.1 RNA Sequence

  3. XR_002337303.1 RNA Sequence

  4. XR_002337305.1 RNA Sequence

  5. XR_002337307.1 RNA Sequence

  6. XR_002337304.1 RNA Sequence

  7. XR_002337306.1 RNA Sequence

  8. XR_002337308.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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