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LOC110254857 heparan sulfate 2-O-sulfotransferase 1 [ Exaiptasia diaphana ]

Gene ID: 110254857, updated on 23-Nov-2023

Summary

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Gene symbol
LOC110254857
Gene description
heparan sulfate 2-O-sulfotransferase 1
Locus tag
AC249_AIPGENE12461
See related
EnsemblRapid:LOC110254857
Gene type
protein coding
RefSeq status
MODEL
Organism
Exaiptasia diaphana
Lineage
Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Aiptasiidae; Exaiptasia
Also known as
HS2ST1
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Genomic context

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See LOC110254857 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_11 current Aiptasia genome 1.1 (GCF_001417965.1) Unplaced Scaffold NW_018384430.1 (429728..437065)

NW_018384430.1Genomic Context describing neighboring genes Neighboring gene cofilin Neighboring gene adenosine receptor A2b-like Neighboring gene vacuolar protein sorting-associated protein 13A Neighboring gene vacuolar protein sorting-associated protein 13-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018384430 Unplaced Scaffold Reference Aiptasia genome 1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Developing the anemone Aiptasia as a tractable model for cnidarian-dinoflagellate symbiosis: the transcriptome of aposymbiotic A. pallida. Lehnert EM, et al. BMC Genomics, 2012 Jun 22. PMID 22726260, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heparan sulfate 2-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, enzymatic modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparan sulfate 2-O-sulfotransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001417965.1-RS_2023_11

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Aiptasia genome 1.1

Genomic

  1. NW_018384430.1 Reference Aiptasia genome 1.1

    Range
    429728..437065
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021061905.2 → XP_020917564.1  heparan sulfate 2-O-sulfotransferase 1

    UniProtKB/TrEMBL
    A0A913YB28
    Related
    XP_020917564.1, XM_021061905.2
    Conserved Domains (1) summary
    pfam03567
    Location:87 → 338
    Sulfotransfer_2; Sulfotransferase family
Nucleotide Protein
Heading Accession and Version

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