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LOC110252049 laminin subunit alpha-1 [ Exaiptasia diaphana ]

Gene ID: 110252049, updated on 23-Nov-2023

Summary

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Gene symbol
LOC110252049
Gene description
laminin subunit alpha-1
Locus tag
AC249_AIPGENE26620
See related
EnsemblRapid:LOC110252049
Gene type
protein coding
RefSeq status
MODEL
Organism
Exaiptasia diaphana
Lineage
Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Aiptasiidae; Exaiptasia
Also known as
Ush2A; Usherin
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See LOC110252049 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
51
Annotation release Status Assembly Chr Location
RS_2023_11 current Aiptasia genome 1.1 (GCF_001417965.1) Unplaced Scaffold NW_018388169.1 (642261..673111)

NW_018388169.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110252034 Neighboring gene multiple C2 and transmembrane domain-containing protein 1 Neighboring gene degenerin deg-1-like Neighboring gene myrosinase 1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018388169 Unplaced Scaffold Reference Aiptasia genome 1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Developing the anemone Aiptasia as a tractable model for cnidarian-dinoflagellate symbiosis: the transcriptome of aposymbiotic A. pallida. Lehnert EM, et al. BMC Genomics, 2012 Jun 22. PMID 22726260, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basement membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
laminin subunit alpha-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001417965.1-RS_2023_11

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Aiptasia genome 1.1

Genomic

  1. NW_018388169.1 Reference Aiptasia genome 1.1

    Range
    642261..673111
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021058811.2 → XP_020914470.1  laminin subunit alpha-1

    UniProtKB/TrEMBL
    A0A913Y495
    Related
    XP_020914470.1, XM_021058811.2
    Conserved Domains (8) summary
    smart00180
    Location:704 → 750
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    smart00282
    Location:1910 → 2040
    LamG; Laminin G domain
    COG0840
    Location:1440 → 1701
    Tar; Methyl-accepting chemotaxis protein [Cell motility, Signal transduction mechanisms]
    cd00055
    Location:782 → 827
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:2485 → 2636
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam00053
    Location:829 → 877
    Laminin_EGF; Laminin EGF domain
    pfam00168
    Location:1290 → 1395
    C2; C2 domain
    cl02806
    Location:27 → 248
    Laminin_N; Laminin N-terminal (Domain VI)
Nucleotide Protein
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