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LOC110249959 probable C-mannosyltransferase DPY19L3 [ Exaiptasia diaphana ]

Gene ID: 110249959, updated on 23-Nov-2023

Summary

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Gene symbol
LOC110249959
Gene description
probable C-mannosyltransferase DPY19L3
Locus tag
AC249_AIPGENE4461
See related
EnsemblRapid:LOC110249959
Gene type
protein coding
RefSeq status
MODEL
Organism
Exaiptasia diaphana
Lineage
Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Aiptasiidae; Exaiptasia
Also known as
DPY19L3
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Genomic context

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See LOC110249959 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2023_11 current Aiptasia genome 1.1 (GCF_001417965.1) Unplaced Scaffold NW_018388003.1 (223878..231518)

NW_018388003.1Genomic Context describing neighboring genes Neighboring gene collagen alpha-1(XXV) chain-like Neighboring gene coiled-coil domain-containing protein 174 Neighboring gene uncharacterized LOC110249960 Neighboring gene brefeldin A-inhibited guanine nucleotide-exchange protein 3-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018388003 Unplaced Scaffold Reference Aiptasia genome 1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Developing the anemone Aiptasia as a tractable model for cnidarian-dinoflagellate symbiosis: the transcriptome of aposymbiotic A. pallida. Lehnert EM, et al. BMC Genomics, 2012 Jun 22. PMID 22726260, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein C-linked glycosylation via 2'-alpha-mannosyl-L-tryptophan IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nuclear inner membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable C-mannosyltransferase DPY19L3
Names
putative C-mannosyltransferase DPY19L3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001417965.1-RS_2023_11

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Aiptasia genome 1.1

Genomic

  1. NW_018388003.1 Reference Aiptasia genome 1.1

    Range
    223878..231518
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028662459.1 → XP_028518260.1  probable C-mannosyltransferase DPY19L3

    UniProtKB/TrEMBL
    A0A913YRY5
    Related
    XP_028518260.1, XM_028662459.1
    Conserved Domains (1) summary
    pfam10034
    Location:53 → 717
    Dpy19; Q-cell neuroblast polarisation
Nucleotide Protein
Heading Accession and Version

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