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LOC110245168 polypeptide N-acetylgalactosaminyltransferase 1 [ Exaiptasia diaphana ]

Gene ID: 110245168, updated on 23-Nov-2023

Summary

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Gene symbol
LOC110245168
Gene description
polypeptide N-acetylgalactosaminyltransferase 1
Locus tag
AC249_AIPGENE2308
See related
EnsemblRapid:LOC110245168
Gene type
protein coding
RefSeq status
MODEL
Organism
Exaiptasia diaphana
Lineage
Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Aiptasiidae; Exaiptasia
Also known as
gly-3; GALNT1
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Genomic context

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See LOC110245168 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_11 current Aiptasia genome 1.1 (GCF_001417965.1) Unplaced Scaffold NW_018386910.1 (123045..133640, complement)

NW_018386910.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110245191 Neighboring gene glutathione gamma-glutamylcysteinyltransferase 2 Neighboring gene 5'-AMP-activated protein kinase subunit gamma-1 Neighboring gene riboflavin-binding protein Neighboring gene general transcription and DNA repair factor IIH helicase subunit XPB-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018386910 Unplaced Scaffold Reference Aiptasia genome 1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Developing the anemone Aiptasia as a tractable model for cnidarian-dinoflagellate symbiosis: the transcriptome of aposymbiotic A. pallida. Lehnert EM, et al. BMC Genomics, 2012 Jun 22. PMID 22726260, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 1
Names
Polypeptide N-acetylgalactosaminyltransferase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001417965.1-RS_2023_11

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Aiptasia genome 1.1

Genomic

  1. NW_018386910.1 Reference Aiptasia genome 1.1

    Range
    123045..133640 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021051428.2 → XP_020907087.1  polypeptide N-acetylgalactosaminyltransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A913XN92
    Related
    XP_020907087.1, XM_021051428.2
    Conserved Domains (2) summary
    cd02510
    Location:180 → 482
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:494 → 607
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  2. XM_028660902.1 → XP_028516703.1  polypeptide N-acetylgalactosaminyltransferase 1 isoform X2

    UniProtKB/TrEMBL
    A0A913YNT6
    Related
    XP_028516703.1, XM_028660902.1
    Conserved Domains (2) summary
    cd02510
    Location:138 → 440
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:454 → 565
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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