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LOC110241297 N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase 1 [ Exaiptasia diaphana ]

Gene ID: 110241297, updated on 23-Nov-2023

Summary

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Gene symbol
LOC110241297
Gene description
N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase 1
Locus tag
AC249_AIPGENE11600
See related
EnsemblRapid:LOC110241297
Gene type
protein coding
RefSeq status
MODEL
Organism
Exaiptasia diaphana
Lineage
Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Aiptasiidae; Exaiptasia
Also known as
B4galnt4
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Genomic context

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See LOC110241297 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_11 current Aiptasia genome 1.1 (GCF_001417965.1) Unplaced Scaffold NW_018385917.1 (211521..214216, complement)

NW_018385917.1Genomic Context describing neighboring genes Neighboring gene annexin A5 Neighboring gene proprotein convertase subtilisin/kexin type 6 Neighboring gene proprotein convertase subtilisin/kexin type 5 Neighboring gene CCR4-NOT transcription complex subunit 6-like Neighboring gene uncharacterized LOC110241240 Neighboring gene calcyphosin-2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018385917 Unplaced Scaffold Reference Aiptasia genome 1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001417965.1-RS_2023_11

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Aiptasia genome 1.1

Genomic

  1. NW_018385917.1 Reference Aiptasia genome 1.1

    Range
    211521..214216 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021047166.2 → XP_020902825.1  N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase 1

    UniProtKB/TrEMBL
    A0A913XDM6
    Related
    XP_020902825.1, XM_021047166.2
    Conserved Domains (2) summary
    cl08459
    Location:10 → 118
    PA14; PA14 domain
    cl11394
    Location:226 → 545
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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