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LOC110236859 gamma-sarcoglycan [ Exaiptasia diaphana ]

Gene ID: 110236859, updated on 23-Nov-2023

Summary

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Gene symbol
LOC110236859
Gene description
gamma-sarcoglycan
Locus tag
AC249_AIPGENE11993
See related
EnsemblRapid:LOC110236859
Gene type
protein coding
RefSeq status
MODEL
Organism
Exaiptasia diaphana
Lineage
Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Aiptasiidae; Exaiptasia
Also known as
SGCG
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Genomic context

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See LOC110236859 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_11 current Aiptasia genome 1.1 (GCF_001417965.1) Unplaced Scaffold NW_018385219.1 (215814..222325)

NW_018385219.1Genomic Context describing neighboring genes Neighboring gene RNA-binding protein 26 Neighboring gene tumor suppressor candidate 3 Neighboring gene uncharacterized LOC110236858 Neighboring gene protein FAM47E Neighboring gene NF-X1-type zinc finger protein NFXL1 Neighboring gene UBX domain-containing protein 6

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018385219 Unplaced Scaffold Reference Aiptasia genome 1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Developing the anemone Aiptasia as a tractable model for cnidarian-dinoflagellate symbiosis: the transcriptome of aposymbiotic A. pallida. Lehnert EM, et al. BMC Genomics, 2012 Jun 22. PMID 22726260, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
gamma-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001417965.1-RS_2023_11

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Aiptasia genome 1.1

Genomic

  1. NW_018385219.1 Reference Aiptasia genome 1.1

    Range
    215814..222325
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021042416.2 → XP_020898075.1  gamma-sarcoglycan

    UniProtKB/TrEMBL
    A0A913X309
    Related
    XP_020898075.1, XM_021042416.2
    Conserved Domains (1) summary
    pfam04790
    Location:26 → 270
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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