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LOC110235689 carbohydrate sulfotransferase 1 [ Exaiptasia diaphana ]

Gene ID: 110235689, updated on 23-Nov-2023

Summary

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Gene symbol
LOC110235689
Gene description
carbohydrate sulfotransferase 1
Locus tag
AC249_AIPGENE3160
See related
EnsemblRapid:LOC110235689
Gene type
protein coding
RefSeq status
MODEL
Organism
Exaiptasia diaphana
Lineage
Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Aiptasiidae; Exaiptasia
Also known as
chst1
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Genomic context

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See LOC110235689 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_11 current Aiptasia genome 1.1 (GCF_001417965.1) Unplaced Scaffold NW_018385098.1 (2204998..2209241)

NW_018385098.1Genomic Context describing neighboring genes Neighboring gene NPC intracellular cholesterol transporter 2 homolog a-like Neighboring gene NPC intracellular cholesterol transporter 2 homolog a Neighboring gene zinc finger protein ubi-d4 B Neighboring gene inactive tyrosine-protein kinase 7 Neighboring gene transmembrane protein 62

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018385098 Unplaced Scaffold Reference Aiptasia genome 1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Developing the anemone Aiptasia as a tractable model for cnidarian-dinoflagellate symbiosis: the transcriptome of aposymbiotic A. pallida. Lehnert EM, et al. BMC Genomics, 2012 Jun 22. PMID 22726260, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables N-acetylglucosamine 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acetylglucosamine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sulfur compound metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001417965.1-RS_2023_11

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Aiptasia genome 1.1

Genomic

  1. NW_018385098.1 Reference Aiptasia genome 1.1

    Range
    2204998..2209241
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021041168.2 → XP_020896827.1  carbohydrate sulfotransferase 1 isoform X2

    UniProtKB/TrEMBL
    A0A913X073
    Related
    XP_020896827.1, XM_021041168.2
    Conserved Domains (1) summary
    cl21551
    Location:216 → 311
    Sulfotransfer_3; Sulfotransferase family

  2. XM_028658072.1 → XP_028513873.1  carbohydrate sulfotransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A913YFT4
    Related
    XP_028513873.1, XM_028658072.1
    Conserved Domains (1) summary
    cl21551
    Location:252 → 347
    Sulfotransfer_3; Sulfotransferase family
Nucleotide Protein
Heading Accession and Version

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