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LOC110233818 bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4 [ Exaiptasia diaphana ]

Gene ID: 110233818, updated on 23-Nov-2023

Summary

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Gene symbol
LOC110233818
Gene description
bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4
Locus tag
AC249_AIPGENE18364
See related
EnsemblRapid:LOC110233818
Gene type
protein coding
RefSeq status
MODEL
Organism
Exaiptasia diaphana
Lineage
Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Aiptasiidae; Exaiptasia
Also known as
NDST4
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Genomic context

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See LOC110233818 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_11 current Aiptasia genome 1.1 (GCF_001417965.1) Unplaced Scaffold NW_018384847.1 (293949..303858, complement)

NW_018384847.1Genomic Context describing neighboring genes Neighboring gene AP-1 complex-associated regulatory protein Neighboring gene signal recognition particle 9 kDa protein Neighboring gene bifunctional heparan sulfate N-deacetylase/N-sulfotransferase Neighboring gene transfer RNA leucine (anticodon CAA)

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018384847 Unplaced Scaffold Reference Aiptasia genome 1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Developing the anemone Aiptasia as a tractable model for cnidarian-dinoflagellate symbiosis: the transcriptome of aposymbiotic A. pallida. Lehnert EM, et al. BMC Genomics, 2012 Jun 22. PMID 22726260, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine N-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001417965.1-RS_2023_11

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Aiptasia genome 1.1

Genomic

  1. NW_018384847.1 Reference Aiptasia genome 1.1

    Range
    293949..303858 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021039145.2 → XP_020894804.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4

    UniProtKB/TrEMBL
    A0A913WVQ5
    Related
    XP_020894804.1, XM_021039145.2
    Conserved Domains (2) summary
    pfam00685
    Location:620 → 864
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:105 → 527
    HSNSD; heparan sulfate-N-deacetylase
Nucleotide Protein
Heading Accession and Version

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