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PANCR PITX2 adjacent non-coding RNA [ Homo sapiens (human) ]

Gene ID: 110231149, updated on 10-Oct-2023

Summary

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Official Symbol
PANCRprovided by HGNC
Official Full Name
PITX2 adjacent non-coding RNAprovided by HGNC
Primary source
HGNC:HGNC:52282
See related
Ensembl:ENSG00000250103 MIM:617286; AllianceGenome:HGNC:52282
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
4q25
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (110595513..110615458, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (113897372..113917319, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (111516669..111536614, complement)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA U2-19 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr4:111393905-111394607 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21817 Neighboring gene glutamyl aminopeptidase Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_72001 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_72004 Neighboring gene Sharpr-MPRA regulatory region 9284 Neighboring gene uncharacterized LOC105377363 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr4:111537217-111537875 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:111540229-111540882 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:111540883-111541534 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:111542189-111542841 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15630 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:111547605-111548106 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:111548107-111548606 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr4:111549504-111550355 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:111553473-111553985 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:111559017-111559517 Neighboring gene paired like homeodomain 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:111560253-111560848 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr4:111562143-111562646 Neighboring gene uncharacterized LOC124900857

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Long Noncoding RNA RP11-380D23.2 Drives Distal-Proximal Patterning of the Lung by Regulating PITX2 Expression. Banerjee P, et al. Stem Cells, 2018 Feb. PMID 29143419
  2. PITX2 and PANCR DNA methylation predicts overall survival in patients with head and neck squamous cell carcinoma. Sailer V, et al. Oncotarget, 2016 Nov 15. PMID 27716615, Free PMC Article
  3. PANCR, the PITX2 Adjacent Noncoding RNA, Is Expressed in Human Left Atria and Regulates PITX2c Expression. Gore-Panter SR, et al. Circ Arrhythm Electrophysiol, 2016 Jan. PMID 26783232, Free PMC Article
  4. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_147203.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC017068, BM710479, BU734267

  2. NR_147204.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC017068
    Related
    ENST00000503456.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    110595513..110615458 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    113897372..113917319 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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