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POLR3A RNA polymerase III subunit A [ Phascolarctos cinereus (koala) ]

Gene ID: 110221447, updated on 15-Mar-2024

Summary

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Gene symbol
POLR3A
Gene description
RNA polymerase III subunit A
See related
Ensembl:ENSPCIG00000015842
Gene type
protein coding
RefSeq status
MODEL
Organism
Phascolarctos cinereus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Diprotodontia; Phascolarctidae; Phascolarctos
Orthologs
human mouse all
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Genomic context

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See POLR3A in Genome Data Viewer
Location:
chromosome: Un
Exon count:
32
Annotation release Status Assembly Chr Location
100 current phaCin_unsw_v4.1 (GCF_002099425.1) Unplaced Scaffold NW_018344063.1 (5817439..5873079, complement)

NW_018344063.1Genomic Context describing neighboring genes Neighboring gene farnesyl pyrophosphate synthase pseudogene Neighboring gene discs large MAGUK scaffold protein 5 Neighboring gene ribosomal protein S24 Neighboring gene uncharacterized LOC110221500 Neighboring gene uncharacterized LOC110221499

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018344063 Unplaced Scaffold Reference phaCin_unsw_v4.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-directed 5'-3' RNA polymerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA-directed RNA polymerase III subunit RPC1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Phascolarctos cinereus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference phaCin_unsw_v4.1 Primary Assembly

Genomic

  1. NW_018344063.1 Reference phaCin_unsw_v4.1 Primary Assembly

    Range
    5817439..5873079 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021006087.1 → XP_020861746.1  DNA-directed RNA polymerase III subunit RPC1 isoform X1

    UniProtKB/TrEMBL
    A0A6P5M0G1
    Related
    ENSPCIP00000020832.1, ENSPCIT00000025710.2
    Conserved Domains (3) summary
    cd02736
    Location:1021 → 1360
    RNAP_III_Rpc1_C; Largest subunit (Rpc1) of Eukaryotic RNA polymerase III (RNAP III), C-terminal domain
    cd02583
    Location:24 → 891
    RNAP_III_RPC1_N; Largest subunit (RPC1) of eukaryotic RNA polymerase III (RNAP III), N-terminal domain
    cl25425
    Location:841 → 1058
    RNAP_largest_subunit_C; Largest subunit of RNA polymerase (RNAP), C-terminal domain

  2. XM_021006088.1 → XP_020861747.1  DNA-directed RNA polymerase III subunit RPC1 isoform X2

    UniProtKB/TrEMBL
    A0A6P5LT91
    Related
    ENSPCIP00000045122.1, ENSPCIT00000051750.1
    Conserved Domains (3) summary
    cd02736
    Location:1000 → 1339
    RNAP_III_Rpc1_C; Largest subunit (Rpc1) of Eukaryotic RNA polymerase III (RNAP III), C-terminal domain
    cd02583
    Location:3 → 870
    RNAP_III_RPC1_N; Largest subunit (RPC1) of eukaryotic RNA polymerase III (RNAP III), N-terminal domain
    cl25425
    Location:820 → 1037
    RNAP_largest_subunit_C; Largest subunit of RNA polymerase (RNAP), C-terminal domain
Nucleotide Protein
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