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VARS1 valyl-tRNA synthetase 1 [ Phascolarctos cinereus (koala) ]

Gene ID: 110199396, updated on 15-Mar-2024

Summary

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Gene symbol
VARS1
Gene description
valyl-tRNA synthetase 1
See related
Ensembl:ENSPCIG00000018553
Gene type
protein coding
RefSeq status
MODEL
Organism
Phascolarctos cinereus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Diprotodontia; Phascolarctidae; Phascolarctos
Also known as
VARS
Orthologs
human mouse all
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Genomic context

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See VARS1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
30
Annotation release Status Assembly Chr Location
100 current phaCin_unsw_v4.1 (GCF_002099425.1) Unplaced Scaffold NW_018344206.1 (2111081..2128270)

NW_018344206.1Genomic Context describing neighboring genes Neighboring gene heat shock 70 kDa protein 1-like Neighboring gene LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated Neighboring gene von Willebrand factor A domain containing 7 Neighboring gene suppressor APC domain containing 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018344206 Unplaced Scaffold Reference phaCin_unsw_v4.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables aminoacyl-tRNA editing activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables valine-tRNA ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in valyl-tRNA aminoacylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: valine--tRNA ligase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Phascolarctos cinereus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference phaCin_unsw_v4.1 Primary Assembly

Genomic

  1. NW_018344206.1 Reference phaCin_unsw_v4.1 Primary Assembly

    Range
    2111081..2128270
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020974213.1 → XP_020829872.1  LOW QUALITY PROTEIN: valine--tRNA ligase

    UniProtKB/TrEMBL
    A0A6P5J6B9
    Related
    ENSPCIP00000024623.2, ENSPCIT00000030336.2
    Conserved Domains (2) summary
    cl02776
    Location:93 → 213
    GST_C_family; C-terminal, alpha helical domain of the Glutathione S-transferase family
    cl26128
    Location:286 → 1264
    tRNA-synt_1g; tRNA synthetases class I (M)
Nucleotide Protein
Heading Accession and Version

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