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POLR2A RNA polymerase II subunit A [ Phascolarctos cinereus (koala) ]

Gene ID: 110194292, updated on 15-Mar-2024

Summary

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Gene symbol
POLR2A
Gene description
RNA polymerase II subunit A
See related
Ensembl:ENSPCIG00000028851
Gene type
protein coding
RefSeq status
MODEL
Organism
Phascolarctos cinereus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Diprotodontia; Phascolarctidae; Phascolarctos
Orthologs
human mouse all
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Genomic context

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See POLR2A in Genome Data Viewer
Location:
chromosome: Un
Exon count:
29
Annotation release Status Assembly Chr Location
100 current phaCin_unsw_v4.1 (GCF_002099425.1) Unplaced Scaffold NW_018344119.1 (5733844..5764396, complement)

NW_018344119.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110194237 Neighboring gene SUMO specific peptidase 3 Neighboring gene solute carrier family 35 member G6 Neighboring gene zinc finger and BTB domain containing 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018344119 Unplaced Scaffold Reference phaCin_unsw_v4.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase II, core complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Phascolarctos cinereus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference phaCin_unsw_v4.1 Primary Assembly

Genomic

  1. NW_018344119.1 Reference phaCin_unsw_v4.1 Primary Assembly

    Range
    5733844..5764396 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020966503.1 → XP_020822162.1  LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB1

    UniProtKB/TrEMBL
    A0A6P5IJ14
    Related
    ENSPCIP00000039309.2, ENSPCIT00000048418.2
    Conserved Domains (5) summary
    cd02584
    Location:1058 → 1476
    RNAP_II_Rpb1_C; Largest subunit (Rpb1) of Eukaryotic RNA polymerase II (RNAP II), C-terminal domain
    smart01104
    Location:1491 → 1610
    CTD; Spt5 C-terminal nonapeptide repeat binding Spt4
    cd02733
    Location:19 → 876
    RNAP_II_RPB1_N; Largest subunit (Rpb1) of eukaryotic RNA polymerase II (RNAP II), N-terminal domain
    pfam04992
    Location:896 → 1079
    RNA_pol_Rpb1_6; RNA polymerase Rpb1, domain 6
    cl25496
    Location:1854 → 1959
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
Nucleotide Protein
Heading Accession and Version

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