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LOC110192535 carbohydrate sulfotransferase 4-like [ Phascolarctos cinereus (koala) ]

Gene ID: 110192535, updated on 9-Nov-2023

Summary

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Gene symbol
LOC110192535
Gene description
carbohydrate sulfotransferase 4-like
See related
Ensembl:ENSPCIG00000034386
Gene type
protein coding
RefSeq status
MODEL
Organism
Phascolarctos cinereus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Diprotodontia; Phascolarctidae; Phascolarctos
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Genomic context

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See LOC110192535 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
100 current phaCin_unsw_v4.1 (GCF_002099425.1) Unplaced Scaffold NW_018344098.1 (5691166..5705070)

NW_018344098.1Genomic Context describing neighboring genes Neighboring gene lysine--tRNA ligase-like Neighboring gene carbohydrate sulfotransferase 4-like Neighboring gene TERF2 interacting protein Neighboring gene tyrosine aminotransferase Neighboring gene uncharacterized LOC110192399

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018344098 Unplaced Scaffold Reference phaCin_unsw_v4.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables N-acetylglucosamine 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acetylglucosamine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein sulfation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 4-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Phascolarctos cinereus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference phaCin_unsw_v4.1 Primary Assembly

Genomic

  1. NW_018344098.1 Reference phaCin_unsw_v4.1 Primary Assembly

    Range
    5691166..5705070
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020963751.1 → XP_020819410.1  carbohydrate sulfotransferase 4-like

    UniProtKB/TrEMBL
    A0A6P5IBP4
    Related
    ENSPCIP00000046184.1, ENSPCIT00000052300.1
    Conserved Domains (1) summary
    pfam13469
    Location:44 → 297
    Sulfotransfer_3; Sulfotransferase family
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases